TY  - JOUR
AU  - Bacova, Aneta
AU  - Cooke, David E. L.
AU  - Milenković, Ivan
AU  - Majek, Tomas
AU  - Nagy, Zoltan
AU  - Corcobado, Tamara
AU  - Randall, Eva
AU  - Keillor, Beatrix
AU  - Cock, Peter J. A.
AU  - Horta Jung, Marilia
AU  - Jung, Thomas
AU  - Tomsovsky, Michal
PY  - 2024
UR  - https://omorika.sfb.bg.ac.rs/handle/123456789/1466
AB  - Phytophthora diversity was examined in eight forest and ornamental nurseries in the Czech Republic. A leaf baiting isolation technique and, in two nurseries, also Illumina DNA metabarcoding were used to reveal the diversity of Phytophthora in soil and irrigation water and compare the efficacy of both approaches. In total, baiting revealed the occurrence of 12 Phytophthora taxa in 59.4% of soil samples from seven (87.5%) nurseries. Additional baiting of compost was carried out in two nurseries and two Phytophthora species were recovered. Irrigation water was examined in three nurseries by baiting or by direct isolation from partially decomposed floating leaves collected from the water source, and two Phytophthora species were obtained. Illumina sequencing of soil and water samples was done in two and one nurseries, respectively. Phytophthora reads were identified as 45 Phytophthora taxa, 15 of them previously unknown taxa from Clades 6, 7, 8 and 9. Another 11 taxa belonged to known or undescribed species of the oomycete genera Globisporangium, Hyaloperonospora, Nothophytophthora, Peronospora and Plasmopara. Overall, with both techniques 50 Phytophthora taxa were detected with five taxa (P. taxon organica, P. plurivora, P. rosacearum, P. syringae and P. transitoria) being exclusively detected by baiting and 38 only by DNA metabarcoding. Particularly common records in DNA barcoding were P. cinnamomi and P. lateralis which were not isolated by baiting. Only seven species were detected by both techniques. It is recommended to use the combination of both techniques to determine true diversity of Phytophthora in managed or natural ecosystems and reveal the presence of rare or unknown Phytophthora taxa.
T2  - European Journal of Plant Pathology
T1  - Hidden Phytophthora diversity unveiled in tree nurseries of the Czech Republic with traditional and metabarcoding techniques
EP  - 156
IS  - 1
SP  - 131
VL  - 170
DO  - 10.1007/s10658-024-02886-1
UR  - conv_1791
ER  - 

@article{
author = "Bacova, Aneta and Cooke, David E. L. and Milenković, Ivan and Majek, Tomas and Nagy, Zoltan and Corcobado, Tamara and Randall, Eva and Keillor, Beatrix and Cock, Peter J. A. and Horta Jung, Marilia and Jung, Thomas and Tomsovsky, Michal",
year = "2024",
abstract = "Phytophthora diversity was examined in eight forest and ornamental nurseries in the Czech Republic. A leaf baiting isolation technique and, in two nurseries, also Illumina DNA metabarcoding were used to reveal the diversity of Phytophthora in soil and irrigation water and compare the efficacy of both approaches. In total, baiting revealed the occurrence of 12 Phytophthora taxa in 59.4% of soil samples from seven (87.5%) nurseries. Additional baiting of compost was carried out in two nurseries and two Phytophthora species were recovered. Irrigation water was examined in three nurseries by baiting or by direct isolation from partially decomposed floating leaves collected from the water source, and two Phytophthora species were obtained. Illumina sequencing of soil and water samples was done in two and one nurseries, respectively. Phytophthora reads were identified as 45 Phytophthora taxa, 15 of them previously unknown taxa from Clades 6, 7, 8 and 9. Another 11 taxa belonged to known or undescribed species of the oomycete genera Globisporangium, Hyaloperonospora, Nothophytophthora, Peronospora and Plasmopara. Overall, with both techniques 50 Phytophthora taxa were detected with five taxa (P. taxon organica, P. plurivora, P. rosacearum, P. syringae and P. transitoria) being exclusively detected by baiting and 38 only by DNA metabarcoding. Particularly common records in DNA barcoding were P. cinnamomi and P. lateralis which were not isolated by baiting. Only seven species were detected by both techniques. It is recommended to use the combination of both techniques to determine true diversity of Phytophthora in managed or natural ecosystems and reveal the presence of rare or unknown Phytophthora taxa.",
journal = "European Journal of Plant Pathology",
title = "Hidden Phytophthora diversity unveiled in tree nurseries of the Czech Republic with traditional and metabarcoding techniques",
pages = "156-131",
number = "1",
volume = "170",
doi = "10.1007/s10658-024-02886-1",
url = "conv_1791"
}

Bacova, A., Cooke, D. E. L., Milenković, I., Majek, T., Nagy, Z., Corcobado, T., Randall, E., Keillor, B., Cock, P. J. A., Horta Jung, M., Jung, T.,& Tomsovsky, M.. (2024). Hidden Phytophthora diversity unveiled in tree nurseries of the Czech Republic with traditional and metabarcoding techniques. in European Journal of Plant Pathology, 170(1), 131-156.
https://doi.org/10.1007/s10658-024-02886-1
conv_1791

Bacova A, Cooke DEL, Milenković I, Majek T, Nagy Z, Corcobado T, Randall E, Keillor B, Cock PJA, Horta Jung M, Jung T, Tomsovsky M. Hidden Phytophthora diversity unveiled in tree nurseries of the Czech Republic with traditional and metabarcoding techniques. in European Journal of Plant Pathology. 2024;170(1):131-156.
doi:10.1007/s10658-024-02886-1
conv_1791 .

Bacova, Aneta, Cooke, David E. L., Milenković, Ivan, Majek, Tomas, Nagy, Zoltan, Corcobado, Tamara, Randall, Eva, Keillor, Beatrix, Cock, Peter J. A., Horta Jung, Marilia, Jung, Thomas, Tomsovsky, Michal, "Hidden Phytophthora diversity unveiled in tree nurseries of the Czech Republic with traditional and metabarcoding techniques" in European Journal of Plant Pathology, 170, no. 1 (2024):131-156,
https://doi.org/10.1007/s10658-024-02886-1 .,
conv_1791 .

TY  - JOUR
AU  - Milenković, Ivan
AU  - Trifković, Miloš
AU  - Karadžić, Dragan
AU  - Jovanović, Dusan
AU  - Radulović, Zlatan
AU  - Horta Jung, Marilia
AU  - Jung, Thomas
PY  - 2024
UR  - https://omorika.sfb.bg.ac.rs/handle/123456789/1462
AB  - When monitoring the health status of various woody host plants in urban areas in Serbia, symptoms indicative of Cryphonectria-like infection were recorded on European hornbeam (Carpinus betulus) trees in the natural monument 'Arboretum of the Faculty of Forestry in Belgrade'. One tree was affected by crown dieback while another one showed dieback of branches. Bark lesions were found on stems which contained numerous stromata with fruiting bodies and orange tendrils. Conidiomata were recorded solely in the infected tissue, producing hyaline, aseptate and bacilloid-shaped conidia with dimensions of 3.4 +/- 0.46 x 1.2 +/- 0.12 mu m. In the isolation tests, all plated bark pieces were positive, and 25 isolates were obtained. Colonies on different agar media were white in the beginning, turning into orange-red colour during ageing. Optimum temperature for growth was 25 degrees C and no growth was recorded at 30 degrees C. A GenBank blast search and a phylogenetic analysis of ITS rDNA sequences of five representative isolates revealed their identity as Cryphonectria carpinicola. To our knowledge, this is the first report of C. carpinicola on hornbeam trees in Serbia, and implications of this finding are discussed.
T2  - Forest Pathology
T1  - First report of Cryphonectria carpinicola on Carpinus betulus in Serbia
IS  - 4
VL  - 54
DO  - 10.1111/efp.12882
UR  - conv_1808
ER  - 

@article{
author = "Milenković, Ivan and Trifković, Miloš and Karadžić, Dragan and Jovanović, Dusan and Radulović, Zlatan and Horta Jung, Marilia and Jung, Thomas",
year = "2024",
abstract = "When monitoring the health status of various woody host plants in urban areas in Serbia, symptoms indicative of Cryphonectria-like infection were recorded on European hornbeam (Carpinus betulus) trees in the natural monument 'Arboretum of the Faculty of Forestry in Belgrade'. One tree was affected by crown dieback while another one showed dieback of branches. Bark lesions were found on stems which contained numerous stromata with fruiting bodies and orange tendrils. Conidiomata were recorded solely in the infected tissue, producing hyaline, aseptate and bacilloid-shaped conidia with dimensions of 3.4 +/- 0.46 x 1.2 +/- 0.12 mu m. In the isolation tests, all plated bark pieces were positive, and 25 isolates were obtained. Colonies on different agar media were white in the beginning, turning into orange-red colour during ageing. Optimum temperature for growth was 25 degrees C and no growth was recorded at 30 degrees C. A GenBank blast search and a phylogenetic analysis of ITS rDNA sequences of five representative isolates revealed their identity as Cryphonectria carpinicola. To our knowledge, this is the first report of C. carpinicola on hornbeam trees in Serbia, and implications of this finding are discussed.",
journal = "Forest Pathology",
title = "First report of Cryphonectria carpinicola on Carpinus betulus in Serbia",
number = "4",
volume = "54",
doi = "10.1111/efp.12882",
url = "conv_1808"
}

Milenković, I., Trifković, M., Karadžić, D., Jovanović, D., Radulović, Z., Horta Jung, M.,& Jung, T.. (2024). First report of Cryphonectria carpinicola on Carpinus betulus in Serbia. in Forest Pathology, 54(4).
https://doi.org/10.1111/efp.12882
conv_1808

Milenković I, Trifković M, Karadžić D, Jovanović D, Radulović Z, Horta Jung M, Jung T. First report of Cryphonectria carpinicola on Carpinus betulus in Serbia. in Forest Pathology. 2024;54(4).
doi:10.1111/efp.12882
conv_1808 .

Milenković, Ivan, Trifković, Miloš, Karadžić, Dragan, Jovanović, Dusan, Radulović, Zlatan, Horta Jung, Marilia, Jung, Thomas, "First report of Cryphonectria carpinicola on Carpinus betulus in Serbia" in Forest Pathology, 54, no. 4 (2024),
https://doi.org/10.1111/efp.12882 .,
conv_1808 .

TY  - JOUR
AU  - Mullett, Martin S.
AU  - Harris, Anna R.
AU  - Scanu, Bruno
AU  - Van Poucke, Kris
AU  - Leboldus, Jared
AU  - Stamm, Elizabeth
AU  - Bourret, Tyler B.
AU  - Christova, Petya K.
AU  - Oliva, Jonas
AU  - Redondo, Miguel A.
AU  - Talgo, Venche
AU  - Corcobado, Tamara
AU  - Milenković, Ivan
AU  - Horta Jung, Marilia
AU  - Webber, Joan
AU  - Heungens, Kurt
AU  - Jung, Thomas
PY  - 2024
UR  - https://omorika.sfb.bg.ac.rs/handle/123456789/1496
AB  - Phytophthora pseudosyringae is a self-fertile pathogen of woody plants, particularly associated with tree species from the genera Fagus, Notholithocarpus, Nothofagus and Quercus, which is found across Europe and in parts of North America and Chile. It can behave as a soil pathogen infecting roots and the stem collar region, as well as an aerial pathogen infecting leaves, twigs and stem barks, causing particular damage in the United Kingdom and western North America. The population structure, migration and potential outcrossing of a worldwide collection of isolates were investigated using genotyping-by-sequencing. Coalescent-based migration analysis revealed that the North American population originated from Europe. Historical gene flow has occurred between the continents in both directions to some extent, yet contemporary migration is overwhelmingly from Europe to North America. Two broad population clusters dominate the global population of the pathogen, with a subgroup derived from one of the main clusters found only in western North America. Index of association and network analyses indicate an influential level of outcrossing has occurred in this preferentially inbreeding, homothallic oomycete. Outcrossing between the two main population clusters has created distinct subgroups of admixed individuals that are, however, less common than the main population clusters. Differences in life history traits between the two main population clusters should be further investigated together with virulence and host range tests to evaluate the risk each population poses to natural environments worldwide.
T2  - Molecular Plant Pathology
T1  - Phylogeography, origin and population structure of the self-fertile emerging plant pathogen Phytophthora pseudosyringae
IS  - 4
VL  - 25
DO  - 10.1111/mpp.13450
UR  - conv_1780
ER  - 

@article{
author = "Mullett, Martin S. and Harris, Anna R. and Scanu, Bruno and Van Poucke, Kris and Leboldus, Jared and Stamm, Elizabeth and Bourret, Tyler B. and Christova, Petya K. and Oliva, Jonas and Redondo, Miguel A. and Talgo, Venche and Corcobado, Tamara and Milenković, Ivan and Horta Jung, Marilia and Webber, Joan and Heungens, Kurt and Jung, Thomas",
year = "2024",
abstract = "Phytophthora pseudosyringae is a self-fertile pathogen of woody plants, particularly associated with tree species from the genera Fagus, Notholithocarpus, Nothofagus and Quercus, which is found across Europe and in parts of North America and Chile. It can behave as a soil pathogen infecting roots and the stem collar region, as well as an aerial pathogen infecting leaves, twigs and stem barks, causing particular damage in the United Kingdom and western North America. The population structure, migration and potential outcrossing of a worldwide collection of isolates were investigated using genotyping-by-sequencing. Coalescent-based migration analysis revealed that the North American population originated from Europe. Historical gene flow has occurred between the continents in both directions to some extent, yet contemporary migration is overwhelmingly from Europe to North America. Two broad population clusters dominate the global population of the pathogen, with a subgroup derived from one of the main clusters found only in western North America. Index of association and network analyses indicate an influential level of outcrossing has occurred in this preferentially inbreeding, homothallic oomycete. Outcrossing between the two main population clusters has created distinct subgroups of admixed individuals that are, however, less common than the main population clusters. Differences in life history traits between the two main population clusters should be further investigated together with virulence and host range tests to evaluate the risk each population poses to natural environments worldwide.",
journal = "Molecular Plant Pathology",
title = "Phylogeography, origin and population structure of the self-fertile emerging plant pathogen Phytophthora pseudosyringae",
number = "4",
volume = "25",
doi = "10.1111/mpp.13450",
url = "conv_1780"
}

Mullett, M. S., Harris, A. R., Scanu, B., Van Poucke, K., Leboldus, J., Stamm, E., Bourret, T. B., Christova, P. K., Oliva, J., Redondo, M. A., Talgo, V., Corcobado, T., Milenković, I., Horta Jung, M., Webber, J., Heungens, K.,& Jung, T.. (2024). Phylogeography, origin and population structure of the self-fertile emerging plant pathogen Phytophthora pseudosyringae. in Molecular Plant Pathology, 25(4).
https://doi.org/10.1111/mpp.13450
conv_1780

Mullett MS, Harris AR, Scanu B, Van Poucke K, Leboldus J, Stamm E, Bourret TB, Christova PK, Oliva J, Redondo MA, Talgo V, Corcobado T, Milenković I, Horta Jung M, Webber J, Heungens K, Jung T. Phylogeography, origin and population structure of the self-fertile emerging plant pathogen Phytophthora pseudosyringae. in Molecular Plant Pathology. 2024;25(4).
doi:10.1111/mpp.13450
conv_1780 .

Mullett, Martin S., Harris, Anna R., Scanu, Bruno, Van Poucke, Kris, Leboldus, Jared, Stamm, Elizabeth, Bourret, Tyler B., Christova, Petya K., Oliva, Jonas, Redondo, Miguel A., Talgo, Venche, Corcobado, Tamara, Milenković, Ivan, Horta Jung, Marilia, Webber, Joan, Heungens, Kurt, Jung, Thomas, "Phylogeography, origin and population structure of the self-fertile emerging plant pathogen Phytophthora pseudosyringae" in Molecular Plant Pathology, 25, no. 4 (2024),
https://doi.org/10.1111/mpp.13450 .,
conv_1780 .

TY  - JOUR
AU  - Jung, T.
AU  - Milenković, Ivan
AU  - Balci, Y.
AU  - Janousek, J.
AU  - Kudlacek, Tomas
AU  - Nagy, Zoltan
AU  - Baharuddin, B.
AU  - Bakonyi, J.
AU  - Broders, Kirk D.
AU  - Cacciola, S. O.
AU  - Chang, T. -T.
AU  - Chi, N. M.
AU  - Corcobado, Tamara
AU  - Cravador, A.
AU  - Đorđević, B.
AU  - Duran, A.
AU  - Ferreira, M.
AU  - Fu, C. -H.
AU  - Garcia, L.
AU  - Hieno, A.
AU  - Ho, H. -H.
AU  - Hong, C.
AU  - Junaid, M.
AU  - Kageyama, K.
AU  - Kuswinanti, T.
AU  - Maia, C.
AU  - Majek, Tomas
AU  - Masuya, H.
AU  - Lio, G. Magnano di San
AU  - Mendieta-Araica, B.
AU  - Nasri, N.
AU  - Oliveira, L. S. S.
AU  - Pane, A.
AU  - Perez-Sierra, Ana
AU  - Rosmana, A.
AU  - von Stowasser, E. Sanfuentes
AU  - Scanu, Bruno
AU  - Singh, R.
AU  - Stanivuković, Zoran
AU  - Tarigan, Marthin
AU  - Thu, P. Q.
AU  - Tomić, Z.
AU  - Tomsovsky, M.
AU  - Uematsu, Seiji
AU  - Webber, Joan
AU  - Zeng, H. -C.
AU  - Zheng, F. -C.
AU  - Brasier, Clive M.
AU  - Horta Jung, Marilia
PY  - 2024
UR  - https://omorika.sfb.bg.ac.rs/handle/123456789/1492
AB  - During 25 surveys of global Phytophthora diversity, conducted between 1998 and 2020, 43 new species were detected in natural ecosystems and, occasionally, in nurseries and outplantings in Europe, Southeast and East Asia and the Americas. Based on a multigene phylogeny of nine nuclear and four mitochondrial gene regions they were assigned to five of the six known subclades, 2a-c, e and f, of Phytophthora major Clade 2 and the new subclade 2g. The evolutionary history of the Clade appears to have involved the pre-Gondwanan divergence of three extant subclades, 2c, 2e and 2f, all having disjunct natural distributions on separate continents and comprising species with a soilborne and aquatic lifestyle and, in addition, a few partially aerial species in Clade 2c; and the post-Gondwanan evolution of subclades 2a and 2g in Southeast/East Asia and 2b in South America, respectively, from their common ancestor. Species in Clade 2g are soilborne whereas Clade 2b comprises both soil-inhabiting and aerial species. Clade 2a has evolved further towards an aerial lifestyle comprising only species which are predominantly or partially airborne. Based on high nuclear heterozygosity levels ca. 38 % of the taxa in Clades 2a and 2b could be some form of hybrid, and the hybridity may be favoured by an A1/A2 breeding system and an aerial life style. Circumstantial evidence suggests the now 93 described species and informally designated taxa in Clade 2 result from both allopatric non-adaptive and sympatric adaptive radiations. They represent most morphological and physiological characters, breeding systems, lifestyles and forms of host specialism found across the Phytophthora clades as a whole, demonstrating the strong biological cohesiveness of the genus. The finding of 43 previously unknown species from a single Phytophthora clade highlight a critical lack of information on the scale of the unknown pathogen threats to forests and natural ecosystems, underlining the risk of basing plant biosecurity protocols mainly on lists of named organisms. More surveys in natural ecosystems of yet unsurveyed regions in Africa, Asia, Central and South America are needed to unveil the full diversity of the clade and the factors driving diversity, speciation and adaptation in Phytophthora.
T2  - Studies in Mycology
T1  - Worldwide forest surveys reveal forty-three new species in Phytophthora major Clade 2 with fundamental implications for the evolution and biogeography of the genus and global plant biosecurity
EP  - 388
IS  - 107
SP  - 251
DO  - 10.3114/sim.2024.107.04
UR  - conv_1770
ER  - 

@article{
author = "Jung, T. and Milenković, Ivan and Balci, Y. and Janousek, J. and Kudlacek, Tomas and Nagy, Zoltan and Baharuddin, B. and Bakonyi, J. and Broders, Kirk D. and Cacciola, S. O. and Chang, T. -T. and Chi, N. M. and Corcobado, Tamara and Cravador, A. and Đorđević, B. and Duran, A. and Ferreira, M. and Fu, C. -H. and Garcia, L. and Hieno, A. and Ho, H. -H. and Hong, C. and Junaid, M. and Kageyama, K. and Kuswinanti, T. and Maia, C. and Majek, Tomas and Masuya, H. and Lio, G. Magnano di San and Mendieta-Araica, B. and Nasri, N. and Oliveira, L. S. S. and Pane, A. and Perez-Sierra, Ana and Rosmana, A. and von Stowasser, E. Sanfuentes and Scanu, Bruno and Singh, R. and Stanivuković, Zoran and Tarigan, Marthin and Thu, P. Q. and Tomić, Z. and Tomsovsky, M. and Uematsu, Seiji and Webber, Joan and Zeng, H. -C. and Zheng, F. -C. and Brasier, Clive M. and Horta Jung, Marilia",
year = "2024",
abstract = "During 25 surveys of global Phytophthora diversity, conducted between 1998 and 2020, 43 new species were detected in natural ecosystems and, occasionally, in nurseries and outplantings in Europe, Southeast and East Asia and the Americas. Based on a multigene phylogeny of nine nuclear and four mitochondrial gene regions they were assigned to five of the six known subclades, 2a-c, e and f, of Phytophthora major Clade 2 and the new subclade 2g. The evolutionary history of the Clade appears to have involved the pre-Gondwanan divergence of three extant subclades, 2c, 2e and 2f, all having disjunct natural distributions on separate continents and comprising species with a soilborne and aquatic lifestyle and, in addition, a few partially aerial species in Clade 2c; and the post-Gondwanan evolution of subclades 2a and 2g in Southeast/East Asia and 2b in South America, respectively, from their common ancestor. Species in Clade 2g are soilborne whereas Clade 2b comprises both soil-inhabiting and aerial species. Clade 2a has evolved further towards an aerial lifestyle comprising only species which are predominantly or partially airborne. Based on high nuclear heterozygosity levels ca. 38 % of the taxa in Clades 2a and 2b could be some form of hybrid, and the hybridity may be favoured by an A1/A2 breeding system and an aerial life style. Circumstantial evidence suggests the now 93 described species and informally designated taxa in Clade 2 result from both allopatric non-adaptive and sympatric adaptive radiations. They represent most morphological and physiological characters, breeding systems, lifestyles and forms of host specialism found across the Phytophthora clades as a whole, demonstrating the strong biological cohesiveness of the genus. The finding of 43 previously unknown species from a single Phytophthora clade highlight a critical lack of information on the scale of the unknown pathogen threats to forests and natural ecosystems, underlining the risk of basing plant biosecurity protocols mainly on lists of named organisms. More surveys in natural ecosystems of yet unsurveyed regions in Africa, Asia, Central and South America are needed to unveil the full diversity of the clade and the factors driving diversity, speciation and adaptation in Phytophthora.",
journal = "Studies in Mycology",
title = "Worldwide forest surveys reveal forty-three new species in Phytophthora major Clade 2 with fundamental implications for the evolution and biogeography of the genus and global plant biosecurity",
pages = "388-251",
number = "107",
doi = "10.3114/sim.2024.107.04",
url = "conv_1770"
}

Jung, T., Milenković, I., Balci, Y., Janousek, J., Kudlacek, T., Nagy, Z., Baharuddin, B., Bakonyi, J., Broders, K. D., Cacciola, S. O., Chang, T. -T., Chi, N. M., Corcobado, T., Cravador, A., Đorđević, B., Duran, A., Ferreira, M., Fu, C. -H., Garcia, L., Hieno, A., Ho, H. -H., Hong, C., Junaid, M., Kageyama, K., Kuswinanti, T., Maia, C., Majek, T., Masuya, H., Lio, G. M. d. S., Mendieta-Araica, B., Nasri, N., Oliveira, L. S. S., Pane, A., Perez-Sierra, A., Rosmana, A., von Stowasser, E. S., Scanu, B., Singh, R., Stanivuković, Z., Tarigan, M., Thu, P. Q., Tomić, Z., Tomsovsky, M., Uematsu, S., Webber, J., Zeng, H. -C., Zheng, F. -C., Brasier, C. M.,& Horta Jung, M.. (2024). Worldwide forest surveys reveal forty-three new species in Phytophthora major Clade 2 with fundamental implications for the evolution and biogeography of the genus and global plant biosecurity. in Studies in Mycology(107), 251-388.
https://doi.org/10.3114/sim.2024.107.04
conv_1770

Jung T, Milenković I, Balci Y, Janousek J, Kudlacek T, Nagy Z, Baharuddin B, Bakonyi J, Broders KD, Cacciola SO, Chang T-, Chi NM, Corcobado T, Cravador A, Đorđević B, Duran A, Ferreira M, Fu C-, Garcia L, Hieno A, Ho H-, Hong C, Junaid M, Kageyama K, Kuswinanti T, Maia C, Majek T, Masuya H, Lio GMDS, Mendieta-Araica B, Nasri N, Oliveira LSS, Pane A, Perez-Sierra A, Rosmana A, von Stowasser ES, Scanu B, Singh R, Stanivuković Z, Tarigan M, Thu PQ, Tomić Z, Tomsovsky M, Uematsu S, Webber J, Zeng H-, Zheng F-, Brasier CM, Horta Jung M. Worldwide forest surveys reveal forty-three new species in Phytophthora major Clade 2 with fundamental implications for the evolution and biogeography of the genus and global plant biosecurity. in Studies in Mycology. 2024;(107):251-388.
doi:10.3114/sim.2024.107.04
conv_1770 .

Jung, T., Milenković, Ivan, Balci, Y., Janousek, J., Kudlacek, Tomas, Nagy, Zoltan, Baharuddin, B., Bakonyi, J., Broders, Kirk D., Cacciola, S. O., Chang, T. -T., Chi, N. M., Corcobado, Tamara, Cravador, A., Đorđević, B., Duran, A., Ferreira, M., Fu, C. -H., Garcia, L., Hieno, A., Ho, H. -H., Hong, C., Junaid, M., Kageyama, K., Kuswinanti, T., Maia, C., Majek, Tomas, Masuya, H., Lio, G. Magnano di San, Mendieta-Araica, B., Nasri, N., Oliveira, L. S. S., Pane, A., Perez-Sierra, Ana, Rosmana, A., von Stowasser, E. Sanfuentes, Scanu, Bruno, Singh, R., Stanivuković, Zoran, Tarigan, Marthin, Thu, P. Q., Tomić, Z., Tomsovsky, M., Uematsu, Seiji, Webber, Joan, Zeng, H. -C., Zheng, F. -C., Brasier, Clive M., Horta Jung, Marilia, "Worldwide forest surveys reveal forty-three new species in Phytophthora major Clade 2 with fundamental implications for the evolution and biogeography of the genus and global plant biosecurity" in Studies in Mycology, no. 107 (2024):251-388,
https://doi.org/10.3114/sim.2024.107.04 .,
conv_1770 .

TY  - JOUR
AU  - Jung, Thomas
AU  - Balci, Yilmaz
AU  - Broders, Kirk D.
AU  - Milenković, Ivan
AU  - Janousek, Josef
AU  - Kudlacek, Tomas
AU  - Đorđević, Biljana
AU  - Horta Jung, Marilia
PY  - 2023
UR  - https://omorika.sfb.bg.ac.rs/handle/123456789/1383
AB  - During a survey of Phytophthora diversity in Panama, fast-growing oomycete isolates were obtained from naturally fallen leaves of an unidentified tree species in a tropical cloud forest. Phylogenetic analyses of sequences from the nuclear ITS, LSU and beta tub loci and the mitochondrial cox1 and cox2 genes revealed that they belong to a new species of a new genus, officially described here as Synchrospora gen. nov., which resided as a basal genus within the Peronosporaceae. The type species S. medusiformis has unique morphological characteristics. The sporangiophores show determinate growth, multifurcating at the end, forming a stunted, candelabra-like apex from which multiple (8 to  gt 100) long, curved pedicels are growing simultaneously in a medusa-like way. The caducous papillate sporangia mature and are shed synchronously. The breeding system is homothallic, hence more inbreeding than outcrossing, with smooth-walled oogonia, plerotic oospores and paragynous antheridia. Optimum and maximum temperatures for growth are 22.5 and 25-27.5 degrees C, consistent with its natural cloud forest habitat. It is concluded that S. medusiformis as adapted to a lifestyle as a canopy-dwelling leaf pathogen in tropical cloud forests. More oomycete explorations in the canopies of tropical rainforests and cloud forests are needed to elucidate the diversity, host associations and ecological roles of oomycetes and, in particular, S. medusiformis and possibly other Synchrospora taxa in this as yet under-explored habitat.
T2  - Journal of Fungi
T1  - Synchrospora gen. nov., a New Peronosporaceae Genus with Aerial Lifestyle from a Natural Cloud Forest in Panama
IS  - 5
VL  - 9
DO  - 10.3390/jof9050517
UR  - conv_1713
ER  - 

@article{
author = "Jung, Thomas and Balci, Yilmaz and Broders, Kirk D. and Milenković, Ivan and Janousek, Josef and Kudlacek, Tomas and Đorđević, Biljana and Horta Jung, Marilia",
year = "2023",
abstract = "During a survey of Phytophthora diversity in Panama, fast-growing oomycete isolates were obtained from naturally fallen leaves of an unidentified tree species in a tropical cloud forest. Phylogenetic analyses of sequences from the nuclear ITS, LSU and beta tub loci and the mitochondrial cox1 and cox2 genes revealed that they belong to a new species of a new genus, officially described here as Synchrospora gen. nov., which resided as a basal genus within the Peronosporaceae. The type species S. medusiformis has unique morphological characteristics. The sporangiophores show determinate growth, multifurcating at the end, forming a stunted, candelabra-like apex from which multiple (8 to  gt 100) long, curved pedicels are growing simultaneously in a medusa-like way. The caducous papillate sporangia mature and are shed synchronously. The breeding system is homothallic, hence more inbreeding than outcrossing, with smooth-walled oogonia, plerotic oospores and paragynous antheridia. Optimum and maximum temperatures for growth are 22.5 and 25-27.5 degrees C, consistent with its natural cloud forest habitat. It is concluded that S. medusiformis as adapted to a lifestyle as a canopy-dwelling leaf pathogen in tropical cloud forests. More oomycete explorations in the canopies of tropical rainforests and cloud forests are needed to elucidate the diversity, host associations and ecological roles of oomycetes and, in particular, S. medusiformis and possibly other Synchrospora taxa in this as yet under-explored habitat.",
journal = "Journal of Fungi",
title = "Synchrospora gen. nov., a New Peronosporaceae Genus with Aerial Lifestyle from a Natural Cloud Forest in Panama",
number = "5",
volume = "9",
doi = "10.3390/jof9050517",
url = "conv_1713"
}

Jung, T., Balci, Y., Broders, K. D., Milenković, I., Janousek, J., Kudlacek, T., Đorđević, B.,& Horta Jung, M.. (2023). Synchrospora gen. nov., a New Peronosporaceae Genus with Aerial Lifestyle from a Natural Cloud Forest in Panama. in Journal of Fungi, 9(5).
https://doi.org/10.3390/jof9050517
conv_1713

Jung T, Balci Y, Broders KD, Milenković I, Janousek J, Kudlacek T, Đorđević B, Horta Jung M. Synchrospora gen. nov., a New Peronosporaceae Genus with Aerial Lifestyle from a Natural Cloud Forest in Panama. in Journal of Fungi. 2023;9(5).
doi:10.3390/jof9050517
conv_1713 .

Jung, Thomas, Balci, Yilmaz, Broders, Kirk D., Milenković, Ivan, Janousek, Josef, Kudlacek, Tomas, Đorđević, Biljana, Horta Jung, Marilia, "Synchrospora gen. nov., a New Peronosporaceae Genus with Aerial Lifestyle from a Natural Cloud Forest in Panama" in Journal of Fungi, 9, no. 5 (2023),
https://doi.org/10.3390/jof9050517 .,
conv_1713 .

TY  - JOUR
AU  - Corcobado, Tamara
AU  - Cech, Thomas L.
AU  - Daxer, Andreas
AU  - Datkova, Henrieta
AU  - Janousek, Josef
AU  - Patra, Sneha
AU  - Jahn, Daniella
AU  - Huettler, Christine
AU  - Milenković, Ivan
AU  - Tomsovsky, Michal
AU  - Horta Jung, Marilia
AU  - Jung, Thomas
PY  - 2023
UR  - https://omorika.sfb.bg.ac.rs/handle/123456789/1441
AB  - Waterways are ideal pathways for Phytophthora dispersal and potential introduction to terrestrial ecosystems. While many Phytophthora species from phylogenetic clades 6, 9 and 10 are predominant oomycetes in watercourses due to their adaptation to a lifestyle as saprotrophs and opportunistic pathogens of riparian plants, species from clades 2, 7 and 8 are predominantly soil- or airborne using aquatic habitats as temporal niches for spreading and invading terrestrial sites along the watercourses. In contrast to forest ecosystems, knowledge of Phytophthora diversity in watercourses in Central Europe is limited. Between 2014 and 2019 extensive surveys of streams and rivers were undertaken across Austria, in South Moravia, Czech Republic and Zilina province, Slovakia to unveil the diversity and distribution of Phytophthora and related oomycetes. In addition, in Austria riparian forests of black alder (Alnus glutinosa) and grey alder (A. incana) in lowlands and in the Alps were examined. A variety of Phytophthora species from clades 2, 6, 7, 8, 9 and 10 were isolated, with clade 6 species showing the widest distribution and abundance. Furthermore, interspecific clade 6 hybrids and other oomycetes such as Halophytophthora fluviatilis and undescribed Nothophytophthora spp. were also obtained. In riparian alders, symptoms of Phytophthora infections were associated with species from the P.xalni complex and P. plurivora. Phytophthora plurivora was most common in alder stands whereas P. uniformis was the oomycete species occurring at the highest altitude in alpine riparian areas.
T2  - Mycological Progress
T1  - Phytophthora , Nothophytophthora and Halophytophthora diversity in rivers, streams and riparian alder ecosystems of Central Europe
IS  - 7
VL  - 22
DO  - 10.1007/s11557-023-01898-1
UR  - conv_1732
ER  - 

@article{
author = "Corcobado, Tamara and Cech, Thomas L. and Daxer, Andreas and Datkova, Henrieta and Janousek, Josef and Patra, Sneha and Jahn, Daniella and Huettler, Christine and Milenković, Ivan and Tomsovsky, Michal and Horta Jung, Marilia and Jung, Thomas",
year = "2023",
abstract = "Waterways are ideal pathways for Phytophthora dispersal and potential introduction to terrestrial ecosystems. While many Phytophthora species from phylogenetic clades 6, 9 and 10 are predominant oomycetes in watercourses due to their adaptation to a lifestyle as saprotrophs and opportunistic pathogens of riparian plants, species from clades 2, 7 and 8 are predominantly soil- or airborne using aquatic habitats as temporal niches for spreading and invading terrestrial sites along the watercourses. In contrast to forest ecosystems, knowledge of Phytophthora diversity in watercourses in Central Europe is limited. Between 2014 and 2019 extensive surveys of streams and rivers were undertaken across Austria, in South Moravia, Czech Republic and Zilina province, Slovakia to unveil the diversity and distribution of Phytophthora and related oomycetes. In addition, in Austria riparian forests of black alder (Alnus glutinosa) and grey alder (A. incana) in lowlands and in the Alps were examined. A variety of Phytophthora species from clades 2, 6, 7, 8, 9 and 10 were isolated, with clade 6 species showing the widest distribution and abundance. Furthermore, interspecific clade 6 hybrids and other oomycetes such as Halophytophthora fluviatilis and undescribed Nothophytophthora spp. were also obtained. In riparian alders, symptoms of Phytophthora infections were associated with species from the P.xalni complex and P. plurivora. Phytophthora plurivora was most common in alder stands whereas P. uniformis was the oomycete species occurring at the highest altitude in alpine riparian areas.",
journal = "Mycological Progress",
title = "Phytophthora , Nothophytophthora and Halophytophthora diversity in rivers, streams and riparian alder ecosystems of Central Europe",
number = "7",
volume = "22",
doi = "10.1007/s11557-023-01898-1",
url = "conv_1732"
}

Corcobado, T., Cech, T. L., Daxer, A., Datkova, H., Janousek, J., Patra, S., Jahn, D., Huettler, C., Milenković, I., Tomsovsky, M., Horta Jung, M.,& Jung, T.. (2023). Phytophthora , Nothophytophthora and Halophytophthora diversity in rivers, streams and riparian alder ecosystems of Central Europe. in Mycological Progress, 22(7).
https://doi.org/10.1007/s11557-023-01898-1
conv_1732

Corcobado T, Cech TL, Daxer A, Datkova H, Janousek J, Patra S, Jahn D, Huettler C, Milenković I, Tomsovsky M, Horta Jung M, Jung T. Phytophthora , Nothophytophthora and Halophytophthora diversity in rivers, streams and riparian alder ecosystems of Central Europe. in Mycological Progress. 2023;22(7).
doi:10.1007/s11557-023-01898-1
conv_1732 .

Corcobado, Tamara, Cech, Thomas L., Daxer, Andreas, Datkova, Henrieta, Janousek, Josef, Patra, Sneha, Jahn, Daniella, Huettler, Christine, Milenković, Ivan, Tomsovsky, Michal, Horta Jung, Marilia, Jung, Thomas, "Phytophthora , Nothophytophthora and Halophytophthora diversity in rivers, streams and riparian alder ecosystems of Central Europe" in Mycological Progress, 22, no. 7 (2023),
https://doi.org/10.1007/s11557-023-01898-1 .,
conv_1732 .

TY  - JOUR
AU  - Maia, C.
AU  - Horta Jung, Marilia
AU  - Carella, G.
AU  - Milenković, Ivan
AU  - Janousek, J.
AU  - Tomsovsky, M.
AU  - Mosca, S.
AU  - Schena, L.
AU  - Cravador, A.
AU  - Moricca, S.
AU  - Jung, T.
PY  - 2022
UR  - https://omorika.sfb.bg.ac.rs/handle/123456789/1374
AB  - During an oomycete survey in December 2015, 10 previously unknown Halophytophthora taxa were isolated from marine and brackish water of tidal ponds and channels in saltmarshes, lagoon ecosystems and river estuaries at seven sites along the Algarve coast in the South of Portugal. Phylogenetic analyses of LSU and ITS datasets, comprising all described Halophytophthora species, the 10 new Halophytophthora taxa and all relevant and distinctive sequences available from GenBank, provided an updated phylogeny of the genus Halophytophthora s.str. showing for the first time a structure of 10 clades designated as Clades 1-10. Nine of the 10 new Halophytophthora taxa resided in Clade 6 together with H. polymorphica and H. vesicula. Based on differences in morphology and temperature-growth relations and a multigene (LSU, ITS, Btub, hsp90, rpl10, tigA, cox1, nadh1, rps10) phylo-geny, eight new Halophytophthora taxa from Portugal are described here as H. brevisporangia, H. cele-ris, H. frigida, H. lateralis, H. lusitanica, H. macrosporangia, H. sinuata and H. thermoambigua. Three species, H. frigida, H. macrosporangia and H. sinuata, have a homothallic breeding system while the remaining five species are sterile. Pathogenicity and litter decomposition tests are underway to clarify their pathological and ecological role in the marine and brackish-water ecosystems. More oomycete surveys in yet undersurveyed regions of the world and population genetic or phylogenomic analyses of global populations are needed to clarify the origin of the new Halophytophthora species.
T2  - Persoonia
T1  - Eight new Halophytophthora species from marine and brackish-water ecosystems in Portugal and an updated phylogeny for the genus
EP  - 90
SP  - 54
VL  - 48
DO  - 10.3767/persoonia.2022.48.02
UR  - conv_1668
ER  - 

@article{
author = "Maia, C. and Horta Jung, Marilia and Carella, G. and Milenković, Ivan and Janousek, J. and Tomsovsky, M. and Mosca, S. and Schena, L. and Cravador, A. and Moricca, S. and Jung, T.",
year = "2022",
abstract = "During an oomycete survey in December 2015, 10 previously unknown Halophytophthora taxa were isolated from marine and brackish water of tidal ponds and channels in saltmarshes, lagoon ecosystems and river estuaries at seven sites along the Algarve coast in the South of Portugal. Phylogenetic analyses of LSU and ITS datasets, comprising all described Halophytophthora species, the 10 new Halophytophthora taxa and all relevant and distinctive sequences available from GenBank, provided an updated phylogeny of the genus Halophytophthora s.str. showing for the first time a structure of 10 clades designated as Clades 1-10. Nine of the 10 new Halophytophthora taxa resided in Clade 6 together with H. polymorphica and H. vesicula. Based on differences in morphology and temperature-growth relations and a multigene (LSU, ITS, Btub, hsp90, rpl10, tigA, cox1, nadh1, rps10) phylo-geny, eight new Halophytophthora taxa from Portugal are described here as H. brevisporangia, H. cele-ris, H. frigida, H. lateralis, H. lusitanica, H. macrosporangia, H. sinuata and H. thermoambigua. Three species, H. frigida, H. macrosporangia and H. sinuata, have a homothallic breeding system while the remaining five species are sterile. Pathogenicity and litter decomposition tests are underway to clarify their pathological and ecological role in the marine and brackish-water ecosystems. More oomycete surveys in yet undersurveyed regions of the world and population genetic or phylogenomic analyses of global populations are needed to clarify the origin of the new Halophytophthora species.",
journal = "Persoonia",
title = "Eight new Halophytophthora species from marine and brackish-water ecosystems in Portugal and an updated phylogeny for the genus",
pages = "90-54",
volume = "48",
doi = "10.3767/persoonia.2022.48.02",
url = "conv_1668"
}

Maia, C., Horta Jung, M., Carella, G., Milenković, I., Janousek, J., Tomsovsky, M., Mosca, S., Schena, L., Cravador, A., Moricca, S.,& Jung, T.. (2022). Eight new Halophytophthora species from marine and brackish-water ecosystems in Portugal and an updated phylogeny for the genus. in Persoonia, 48, 54-90.
https://doi.org/10.3767/persoonia.2022.48.02
conv_1668

Maia C, Horta Jung M, Carella G, Milenković I, Janousek J, Tomsovsky M, Mosca S, Schena L, Cravador A, Moricca S, Jung T. Eight new Halophytophthora species from marine and brackish-water ecosystems in Portugal and an updated phylogeny for the genus. in Persoonia. 2022;48:54-90.
doi:10.3767/persoonia.2022.48.02
conv_1668 .

Maia, C., Horta Jung, Marilia, Carella, G., Milenković, Ivan, Janousek, J., Tomsovsky, M., Mosca, S., Schena, L., Cravador, A., Moricca, S., Jung, T., "Eight new Halophytophthora species from marine and brackish-water ecosystems in Portugal and an updated phylogeny for the genus" in Persoonia, 48 (2022):54-90,
https://doi.org/10.3767/persoonia.2022.48.02 .,
conv_1668 .

TY  - JOUR
AU  - Chen, Q.
AU  - Bakhshi, M.
AU  - Balci, Y.
AU  - Broders, Kirk D.
AU  - Cheewangkoon, R.
AU  - Chen, S. F.
AU  - Fan, X. L.
AU  - Gramaje, D.
AU  - Halleen, F.
AU  - Horta Jung, Marilia
AU  - Jiang, N.
AU  - Jung, T.
AU  - Majek, Tomas
AU  - Marincowitz, S.
AU  - Milenković, Ivan
AU  - Mostert, L.
AU  - Nakashima, C.
AU  - Faziha, I. Nurul
AU  - Pan, M.
AU  - Raza, M.
AU  - Scanu, Bruno
AU  - Spies, C. F. J.
AU  - Suhaizan, L.
AU  - Suzuki, H.
AU  - Tian, C. M.
AU  - Tomsovsky, M.
AU  - Torres, J. R. Urbez
AU  - Wang, W.
AU  - Wingfield, B. D.
AU  - Wingfield, Michael J.
AU  - Yang, Q.
AU  - Yang, X.
AU  - Zare, R.
AU  - Zhao, P.
AU  - Groenewald, J. Z.
AU  - Cai, L.
AU  - Crous, P. W.
PY  - 2022
UR  - https://omorika.sfb.bg.ac.rs/handle/123456789/1308
AB  - This paper is the fourth contribution in the Genera of Phytopathogenic Fungi (GOPHY) series. The series provides morphological descriptions and information about the pathology, distribution, hosts and disease symptoms, as well as DNA barcodes for the taxa covered. Moreover, 12 whole-genome sequences for the type or new species in the treated genera are provided. The fourth paper in the GOPHY series covers 19 genera of phytopathogenic fungi and their relatives, including Ascochyta, Cadophora, Celoporthe, Cercospora, Coleophoma, Cytospora, Dendrostoma, Didymella, Endothia, Heterophae-omoniella, Leptosphaerulina, Melampsora, Nigrospora, Pezicula, Phaeomoniella, Pseudocercospora, Pteridopassalora, Zymoseptoria, and one genus of oomycetes, Phytophthora. This study includes two new genera, 30 new species, five new combinations, and 43 typifications of older names.
T2  - Studies in Mycology
T1  - Genera of phytopathogenic fungi: GOPHY 4
EP  - 564
IS  - 101
SP  - 417
DO  - 10.3114/sim.2022.101.06
UR  - conv_1644
ER  - 

@article{
author = "Chen, Q. and Bakhshi, M. and Balci, Y. and Broders, Kirk D. and Cheewangkoon, R. and Chen, S. F. and Fan, X. L. and Gramaje, D. and Halleen, F. and Horta Jung, Marilia and Jiang, N. and Jung, T. and Majek, Tomas and Marincowitz, S. and Milenković, Ivan and Mostert, L. and Nakashima, C. and Faziha, I. Nurul and Pan, M. and Raza, M. and Scanu, Bruno and Spies, C. F. J. and Suhaizan, L. and Suzuki, H. and Tian, C. M. and Tomsovsky, M. and Torres, J. R. Urbez and Wang, W. and Wingfield, B. D. and Wingfield, Michael J. and Yang, Q. and Yang, X. and Zare, R. and Zhao, P. and Groenewald, J. Z. and Cai, L. and Crous, P. W.",
year = "2022",
abstract = "This paper is the fourth contribution in the Genera of Phytopathogenic Fungi (GOPHY) series. The series provides morphological descriptions and information about the pathology, distribution, hosts and disease symptoms, as well as DNA barcodes for the taxa covered. Moreover, 12 whole-genome sequences for the type or new species in the treated genera are provided. The fourth paper in the GOPHY series covers 19 genera of phytopathogenic fungi and their relatives, including Ascochyta, Cadophora, Celoporthe, Cercospora, Coleophoma, Cytospora, Dendrostoma, Didymella, Endothia, Heterophae-omoniella, Leptosphaerulina, Melampsora, Nigrospora, Pezicula, Phaeomoniella, Pseudocercospora, Pteridopassalora, Zymoseptoria, and one genus of oomycetes, Phytophthora. This study includes two new genera, 30 new species, five new combinations, and 43 typifications of older names.",
journal = "Studies in Mycology",
title = "Genera of phytopathogenic fungi: GOPHY 4",
pages = "564-417",
number = "101",
doi = "10.3114/sim.2022.101.06",
url = "conv_1644"
}

Chen, Q., Bakhshi, M., Balci, Y., Broders, K. D., Cheewangkoon, R., Chen, S. F., Fan, X. L., Gramaje, D., Halleen, F., Horta Jung, M., Jiang, N., Jung, T., Majek, T., Marincowitz, S., Milenković, I., Mostert, L., Nakashima, C., Faziha, I. N., Pan, M., Raza, M., Scanu, B., Spies, C. F. J., Suhaizan, L., Suzuki, H., Tian, C. M., Tomsovsky, M., Torres, J. R. U., Wang, W., Wingfield, B. D., Wingfield, M. J., Yang, Q., Yang, X., Zare, R., Zhao, P., Groenewald, J. Z., Cai, L.,& Crous, P. W.. (2022). Genera of phytopathogenic fungi: GOPHY 4. in Studies in Mycology(101), 417-564.
https://doi.org/10.3114/sim.2022.101.06
conv_1644

Chen Q, Bakhshi M, Balci Y, Broders KD, Cheewangkoon R, Chen SF, Fan XL, Gramaje D, Halleen F, Horta Jung M, Jiang N, Jung T, Majek T, Marincowitz S, Milenković I, Mostert L, Nakashima C, Faziha IN, Pan M, Raza M, Scanu B, Spies CFJ, Suhaizan L, Suzuki H, Tian CM, Tomsovsky M, Torres JRU, Wang W, Wingfield BD, Wingfield MJ, Yang Q, Yang X, Zare R, Zhao P, Groenewald JZ, Cai L, Crous PW. Genera of phytopathogenic fungi: GOPHY 4. in Studies in Mycology. 2022;(101):417-564.
doi:10.3114/sim.2022.101.06
conv_1644 .

Chen, Q., Bakhshi, M., Balci, Y., Broders, Kirk D., Cheewangkoon, R., Chen, S. F., Fan, X. L., Gramaje, D., Halleen, F., Horta Jung, Marilia, Jiang, N., Jung, T., Majek, Tomas, Marincowitz, S., Milenković, Ivan, Mostert, L., Nakashima, C., Faziha, I. Nurul, Pan, M., Raza, M., Scanu, Bruno, Spies, C. F. J., Suhaizan, L., Suzuki, H., Tian, C. M., Tomsovsky, M., Torres, J. R. Urbez, Wang, W., Wingfield, B. D., Wingfield, Michael J., Yang, Q., Yang, X., Zare, R., Zhao, P., Groenewald, J. Z., Cai, L., Crous, P. W., "Genera of phytopathogenic fungi: GOPHY 4" in Studies in Mycology, no. 101 (2022):417-564,
https://doi.org/10.3114/sim.2022.101.06 .,
conv_1644 .

TY  - JOUR
AU  - Jung, T.
AU  - Milenković, Ivan
AU  - Corcobado, Tamara
AU  - Majek, Tomas
AU  - Janousek, J.
AU  - Kudlacek, Tomas
AU  - Tomsovsky, M.
AU  - Nagy, Zoltan
AU  - Duran, A.
AU  - Tarigan, Marthin
AU  - von Stowasser, E. Sanfuentes
AU  - Singh, R.
AU  - Ferreira, M.
AU  - Webber, Joan
AU  - Scanu, Bruno
AU  - Chi, N. M.
AU  - Thu, P. Q.
AU  - Junaid, M.
AU  - Rosmana, A.
AU  - Baharuddin, B.
AU  - Kuswinanti, T.
AU  - Nasri, N.
AU  - Kageyama, K.
AU  - Hieno, A.
AU  - Masuya, H.
AU  - Uematsu, Seiji
AU  - Oliva, J.
AU  - Redondo, Miguel A.
AU  - Maia, C.
AU  - Matsiakh, I.
AU  - Kramarets, V.
AU  - O'Hanlon, R.
AU  - Tomić, Z.
AU  - Brasier, Clive M.
AU  - Horta Jung, Marilia
PY  - 2022
UR  - https://omorika.sfb.bg.ac.rs/handle/123456789/1314
AB  - During extensive surveys of global Phytophthora diversity 14 new species detected in natural ecosystems in Chile, Indonesia, USA (Louisiana), Sweden, Ukraine and Vietnam were assigned to Phytophthora major Clade 10 based on a multigene phylogeny of nine nuclear and three mitochondrial gene regions. Clade 10 now comprises three subclades. Subclades 10a and 10b contain species with nonpapillate sporangia, a range of breeding systems and a mainly soil-and waterborne lifestyle. These include the previously described P. afrocarpa, P. gallica and P. intercalaris and eight of the new species: P. ludoviciana, P. procera, P. pseudogallica, P. scandinavica, P. subarctica, P. tenui- mura, P. tonkinensis and P. ukrainensis. In contrast, all species in Subclade 10c have papillate sporangia and are self-fertile (or homothallic) with an aerial lifestyle including the known P. boehmeriae, P. gondwanensis, P. kernoviae and P. morindae and the new species P. celebensis, P. chilensis, P. javanensis, P. multiglobulosa, P. pseudochilensis and P. pseudokernoviae. All new Phytophthora species differed from each other and from related species by their unique combinations of morphological characters, breeding systems, cardinal temperatures and growth rates. The biogeography and evolutionary history of Clade 10 are discussed. We propose that the three subclades originated via the early divergence of pre-Gondwanan ancestors  gt  175 Mya into water-and soilborne and aerially dispersed lineages and subsequently underwent multiple allopatric and sympatric radiations during their global spread.
T2  - Persoonia
T1  - Extensive morphological and behavioural diversity among fourteen new and seven described species in Phytophthora Clade 10 and its evolutionary implications
EP  - 57
SP  - 1
VL  - 49
DO  - 10.3767/persoonia.2022.49.01
UR  - conv_1684
ER  - 

@article{
author = "Jung, T. and Milenković, Ivan and Corcobado, Tamara and Majek, Tomas and Janousek, J. and Kudlacek, Tomas and Tomsovsky, M. and Nagy, Zoltan and Duran, A. and Tarigan, Marthin and von Stowasser, E. Sanfuentes and Singh, R. and Ferreira, M. and Webber, Joan and Scanu, Bruno and Chi, N. M. and Thu, P. Q. and Junaid, M. and Rosmana, A. and Baharuddin, B. and Kuswinanti, T. and Nasri, N. and Kageyama, K. and Hieno, A. and Masuya, H. and Uematsu, Seiji and Oliva, J. and Redondo, Miguel A. and Maia, C. and Matsiakh, I. and Kramarets, V. and O'Hanlon, R. and Tomić, Z. and Brasier, Clive M. and Horta Jung, Marilia",
year = "2022",
abstract = "During extensive surveys of global Phytophthora diversity 14 new species detected in natural ecosystems in Chile, Indonesia, USA (Louisiana), Sweden, Ukraine and Vietnam were assigned to Phytophthora major Clade 10 based on a multigene phylogeny of nine nuclear and three mitochondrial gene regions. Clade 10 now comprises three subclades. Subclades 10a and 10b contain species with nonpapillate sporangia, a range of breeding systems and a mainly soil-and waterborne lifestyle. These include the previously described P. afrocarpa, P. gallica and P. intercalaris and eight of the new species: P. ludoviciana, P. procera, P. pseudogallica, P. scandinavica, P. subarctica, P. tenui- mura, P. tonkinensis and P. ukrainensis. In contrast, all species in Subclade 10c have papillate sporangia and are self-fertile (or homothallic) with an aerial lifestyle including the known P. boehmeriae, P. gondwanensis, P. kernoviae and P. morindae and the new species P. celebensis, P. chilensis, P. javanensis, P. multiglobulosa, P. pseudochilensis and P. pseudokernoviae. All new Phytophthora species differed from each other and from related species by their unique combinations of morphological characters, breeding systems, cardinal temperatures and growth rates. The biogeography and evolutionary history of Clade 10 are discussed. We propose that the three subclades originated via the early divergence of pre-Gondwanan ancestors  gt  175 Mya into water-and soilborne and aerially dispersed lineages and subsequently underwent multiple allopatric and sympatric radiations during their global spread.",
journal = "Persoonia",
title = "Extensive morphological and behavioural diversity among fourteen new and seven described species in Phytophthora Clade 10 and its evolutionary implications",
pages = "57-1",
volume = "49",
doi = "10.3767/persoonia.2022.49.01",
url = "conv_1684"
}

Jung, T., Milenković, I., Corcobado, T., Majek, T., Janousek, J., Kudlacek, T., Tomsovsky, M., Nagy, Z., Duran, A., Tarigan, M., von Stowasser, E. S., Singh, R., Ferreira, M., Webber, J., Scanu, B., Chi, N. M., Thu, P. Q., Junaid, M., Rosmana, A., Baharuddin, B., Kuswinanti, T., Nasri, N., Kageyama, K., Hieno, A., Masuya, H., Uematsu, S., Oliva, J., Redondo, M. A., Maia, C., Matsiakh, I., Kramarets, V., O'Hanlon, R., Tomić, Z., Brasier, C. M.,& Horta Jung, M.. (2022). Extensive morphological and behavioural diversity among fourteen new and seven described species in Phytophthora Clade 10 and its evolutionary implications. in Persoonia, 49, 1-57.
https://doi.org/10.3767/persoonia.2022.49.01
conv_1684

Jung T, Milenković I, Corcobado T, Majek T, Janousek J, Kudlacek T, Tomsovsky M, Nagy Z, Duran A, Tarigan M, von Stowasser ES, Singh R, Ferreira M, Webber J, Scanu B, Chi NM, Thu PQ, Junaid M, Rosmana A, Baharuddin B, Kuswinanti T, Nasri N, Kageyama K, Hieno A, Masuya H, Uematsu S, Oliva J, Redondo MA, Maia C, Matsiakh I, Kramarets V, O'Hanlon R, Tomić Z, Brasier CM, Horta Jung M. Extensive morphological and behavioural diversity among fourteen new and seven described species in Phytophthora Clade 10 and its evolutionary implications. in Persoonia. 2022;49:1-57.
doi:10.3767/persoonia.2022.49.01
conv_1684 .

Jung, T., Milenković, Ivan, Corcobado, Tamara, Majek, Tomas, Janousek, J., Kudlacek, Tomas, Tomsovsky, M., Nagy, Zoltan, Duran, A., Tarigan, Marthin, von Stowasser, E. Sanfuentes, Singh, R., Ferreira, M., Webber, Joan, Scanu, Bruno, Chi, N. M., Thu, P. Q., Junaid, M., Rosmana, A., Baharuddin, B., Kuswinanti, T., Nasri, N., Kageyama, K., Hieno, A., Masuya, H., Uematsu, Seiji, Oliva, J., Redondo, Miguel A., Maia, C., Matsiakh, I., Kramarets, V., O'Hanlon, R., Tomić, Z., Brasier, Clive M., Horta Jung, Marilia, "Extensive morphological and behavioural diversity among fourteen new and seven described species in Phytophthora Clade 10 and its evolutionary implications" in Persoonia, 49 (2022):1-57,
https://doi.org/10.3767/persoonia.2022.49.01 .,
conv_1684 .

TY  - JOUR
AU  - Jung, Thomas
AU  - Horta Jung, Marilia
AU  - Webber, Joan
AU  - Kageyama, Koji
AU  - Hieno, Ayaka
AU  - Masuya, Hayato
AU  - Uematsu, Seiji
AU  - Perez-Sierra, Ana
AU  - Harris, Anna R.
AU  - Forster, Jack
AU  - Rees, Helen
AU  - Scanu, Bruno
AU  - Patra, Sneha
AU  - Kudlacek, Tomas
AU  - Janousek, Josef
AU  - Corcobado, Tamara
AU  - Milenković, Ivan
AU  - Nagy, Zoltan
AU  - Csorba, Ildiko
AU  - Bakonyi, Jozsef
AU  - Brasier, Clive M.
PY  - 2021
UR  - https://omorika.sfb.bg.ac.rs/handle/123456789/1217
AB  - As global plant trade expands, tree disease epidemics caused by pathogen introductions are increasing. Since ca 2000, the introduced oomycete Phytophthora ramorum has caused devastating epidemics in Europe and North America, spreading as four ancient clonal lineages, each of a single mating type, suggesting different geographical origins. We surveyed laurosilva forests for P. ramorum around Fansipan mountain on the Vietnam-China border and on Shikoku and Kyushu islands, southwest Japan. The surveys yielded 71 P. ramorum isolates which we assigned to eight new lineages, IC1 to IC5 from Vietnam and NP1 to NP3 from Japan, based on differences in colony characteristics, gene x environment responses and multigene phylogeny. Molecular phylogenetic trees and networks revealed the eight Asian lineages were dispersed across the topology of the introduced European and North American lineages. The deepest node within P. ramorum, the divergence of lineages NP1 and NP2, was estimated at 0.5 to 1.6 Myr. The Asian lineages were each of a single mating type, and at some locations, lineages of "opposite" mating type were present, suggesting opportunities for inter-lineage recombination. Based on the high level of phenotypic and phylogenetic diversity in the sample populations, the coalescence results and the absence of overt host symptoms, we conclude that P. ramorum comprises many anciently divergent lineages native to the laurosilva forests between eastern Indochina and Japan.
T2  - Journal of Fungi
T1  - The Destructive Tree Pathogen Phytophthora ramorum Originates from the Laurosilva Forests of East Asia
IS  - 3
VL  - 7
DO  - 10.3390/jof7030226
UR  - conv_1536
ER  - 

@article{
author = "Jung, Thomas and Horta Jung, Marilia and Webber, Joan and Kageyama, Koji and Hieno, Ayaka and Masuya, Hayato and Uematsu, Seiji and Perez-Sierra, Ana and Harris, Anna R. and Forster, Jack and Rees, Helen and Scanu, Bruno and Patra, Sneha and Kudlacek, Tomas and Janousek, Josef and Corcobado, Tamara and Milenković, Ivan and Nagy, Zoltan and Csorba, Ildiko and Bakonyi, Jozsef and Brasier, Clive M.",
year = "2021",
abstract = "As global plant trade expands, tree disease epidemics caused by pathogen introductions are increasing. Since ca 2000, the introduced oomycete Phytophthora ramorum has caused devastating epidemics in Europe and North America, spreading as four ancient clonal lineages, each of a single mating type, suggesting different geographical origins. We surveyed laurosilva forests for P. ramorum around Fansipan mountain on the Vietnam-China border and on Shikoku and Kyushu islands, southwest Japan. The surveys yielded 71 P. ramorum isolates which we assigned to eight new lineages, IC1 to IC5 from Vietnam and NP1 to NP3 from Japan, based on differences in colony characteristics, gene x environment responses and multigene phylogeny. Molecular phylogenetic trees and networks revealed the eight Asian lineages were dispersed across the topology of the introduced European and North American lineages. The deepest node within P. ramorum, the divergence of lineages NP1 and NP2, was estimated at 0.5 to 1.6 Myr. The Asian lineages were each of a single mating type, and at some locations, lineages of "opposite" mating type were present, suggesting opportunities for inter-lineage recombination. Based on the high level of phenotypic and phylogenetic diversity in the sample populations, the coalescence results and the absence of overt host symptoms, we conclude that P. ramorum comprises many anciently divergent lineages native to the laurosilva forests between eastern Indochina and Japan.",
journal = "Journal of Fungi",
title = "The Destructive Tree Pathogen Phytophthora ramorum Originates from the Laurosilva Forests of East Asia",
number = "3",
volume = "7",
doi = "10.3390/jof7030226",
url = "conv_1536"
}

Jung, T., Horta Jung, M., Webber, J., Kageyama, K., Hieno, A., Masuya, H., Uematsu, S., Perez-Sierra, A., Harris, A. R., Forster, J., Rees, H., Scanu, B., Patra, S., Kudlacek, T., Janousek, J., Corcobado, T., Milenković, I., Nagy, Z., Csorba, I., Bakonyi, J.,& Brasier, C. M.. (2021). The Destructive Tree Pathogen Phytophthora ramorum Originates from the Laurosilva Forests of East Asia. in Journal of Fungi, 7(3).
https://doi.org/10.3390/jof7030226
conv_1536

Jung T, Horta Jung M, Webber J, Kageyama K, Hieno A, Masuya H, Uematsu S, Perez-Sierra A, Harris AR, Forster J, Rees H, Scanu B, Patra S, Kudlacek T, Janousek J, Corcobado T, Milenković I, Nagy Z, Csorba I, Bakonyi J, Brasier CM. The Destructive Tree Pathogen Phytophthora ramorum Originates from the Laurosilva Forests of East Asia. in Journal of Fungi. 2021;7(3).
doi:10.3390/jof7030226
conv_1536 .

Jung, Thomas, Horta Jung, Marilia, Webber, Joan, Kageyama, Koji, Hieno, Ayaka, Masuya, Hayato, Uematsu, Seiji, Perez-Sierra, Ana, Harris, Anna R., Forster, Jack, Rees, Helen, Scanu, Bruno, Patra, Sneha, Kudlacek, Tomas, Janousek, Josef, Corcobado, Tamara, Milenković, Ivan, Nagy, Zoltan, Csorba, Ildiko, Bakonyi, Jozsef, Brasier, Clive M., "The Destructive Tree Pathogen Phytophthora ramorum Originates from the Laurosilva Forests of East Asia" in Journal of Fungi, 7, no. 3 (2021),
https://doi.org/10.3390/jof7030226 .,
conv_1536 .

TY  - JOUR
AU  - Oliveira, Leonardo Sarno Soares
AU  - Jung, Thomas
AU  - Milenković, Ivan
AU  - Tarigan, Marthin
AU  - Horta Jung, Marilia
AU  - Lumbangaol, Pantun David Mangatas
AU  - Sirait, Betti Andriany
AU  - Duran, Alvaro
PY  - 2021
UR  - https://omorika.sfb.bg.ac.rs/handle/123456789/1241
AB  - Acacia crassicarpa is a legume tree of rapid growth and high pulp yield and fibre quality, making this species the basis of large commercial plantations for pulpwood production in Southeast Asian countries. Since a disease has caused significant economic losses in a nursery in the province of Riau, Sumatra, Indonesia, this study aimed to identify the causal agent of the root rot, damping-off and wilting symptoms of A. crasicarpa seedlings. Isolations were made from infested soil by baiting with young leaves of native Quercus spp. from northern Sumatra. Classical identification using colony growth patterns and morphological characters, molecular identification based on ITS sequence analysis and direct PCR with specific primers, and pathogenicity tests were performed. All isolates formed typical Pythium structures and had fast growth, with optimum and maximum temperatures of 35 and 42 degrees C, respectively. ITS sequence analysis of seven selected isolates showed 99.7-99.9% homology with Pythium myriotylum, the causal agent of nursery diseases on many crops. In addition, species-specific primers Pmy5/ITS2 successfully yielded an expected amplicon of approximately 144 bp. A soil infestation trial under controlled conditions confirmed the pathogenicity of P. myriotylum to A. crassicarpa, with typical symptoms starting six days after inoculation. The pathogen was re-isolated only from diseased inoculated plants fulfilling Koch's postulates. This is the first report of P. myriotylum as a pathogen on A. crassicarpa.
T2  - Forest Pathology
T1  - Damping-off, root rot and wilting caused by Pythium myriotylum on Acacia crassicarpa in Sumatra, Indonesia
IS  - 3
VL  - 51
DO  - 10.1111/efp.12687
UR  - conv_1543
ER  - 

@article{
author = "Oliveira, Leonardo Sarno Soares and Jung, Thomas and Milenković, Ivan and Tarigan, Marthin and Horta Jung, Marilia and Lumbangaol, Pantun David Mangatas and Sirait, Betti Andriany and Duran, Alvaro",
year = "2021",
abstract = "Acacia crassicarpa is a legume tree of rapid growth and high pulp yield and fibre quality, making this species the basis of large commercial plantations for pulpwood production in Southeast Asian countries. Since a disease has caused significant economic losses in a nursery in the province of Riau, Sumatra, Indonesia, this study aimed to identify the causal agent of the root rot, damping-off and wilting symptoms of A. crasicarpa seedlings. Isolations were made from infested soil by baiting with young leaves of native Quercus spp. from northern Sumatra. Classical identification using colony growth patterns and morphological characters, molecular identification based on ITS sequence analysis and direct PCR with specific primers, and pathogenicity tests were performed. All isolates formed typical Pythium structures and had fast growth, with optimum and maximum temperatures of 35 and 42 degrees C, respectively. ITS sequence analysis of seven selected isolates showed 99.7-99.9% homology with Pythium myriotylum, the causal agent of nursery diseases on many crops. In addition, species-specific primers Pmy5/ITS2 successfully yielded an expected amplicon of approximately 144 bp. A soil infestation trial under controlled conditions confirmed the pathogenicity of P. myriotylum to A. crassicarpa, with typical symptoms starting six days after inoculation. The pathogen was re-isolated only from diseased inoculated plants fulfilling Koch's postulates. This is the first report of P. myriotylum as a pathogen on A. crassicarpa.",
journal = "Forest Pathology",
title = "Damping-off, root rot and wilting caused by Pythium myriotylum on Acacia crassicarpa in Sumatra, Indonesia",
number = "3",
volume = "51",
doi = "10.1111/efp.12687",
url = "conv_1543"
}

Oliveira, L. S. S., Jung, T., Milenković, I., Tarigan, M., Horta Jung, M., Lumbangaol, P. D. M., Sirait, B. A.,& Duran, A.. (2021). Damping-off, root rot and wilting caused by Pythium myriotylum on Acacia crassicarpa in Sumatra, Indonesia. in Forest Pathology, 51(3).
https://doi.org/10.1111/efp.12687
conv_1543

Oliveira LSS, Jung T, Milenković I, Tarigan M, Horta Jung M, Lumbangaol PDM, Sirait BA, Duran A. Damping-off, root rot and wilting caused by Pythium myriotylum on Acacia crassicarpa in Sumatra, Indonesia. in Forest Pathology. 2021;51(3).
doi:10.1111/efp.12687
conv_1543 .

Oliveira, Leonardo Sarno Soares, Jung, Thomas, Milenković, Ivan, Tarigan, Marthin, Horta Jung, Marilia, Lumbangaol, Pantun David Mangatas, Sirait, Betti Andriany, Duran, Alvaro, "Damping-off, root rot and wilting caused by Pythium myriotylum on Acacia crassicarpa in Sumatra, Indonesia" in Forest Pathology, 51, no. 3 (2021),
https://doi.org/10.1111/efp.12687 .,
conv_1543 .

TY  - JOUR
AU  - O'Hanlon, Richard
AU  - Destefanis, Maria
AU  - Milenković, Ivan
AU  - Tomsovsky, Michal
AU  - Janousek, Josef
AU  - Bellgard, Stanley E.
AU  - Weir, Bevan S.
AU  - Kudlacek, Tomas
AU  - Horta Jung, Marilia
AU  - Jung, Thomas
PY  - 2021
UR  - https://omorika.sfb.bg.ac.rs/handle/123456789/1184
AB  - Slow growing oomycete isolates with morphological resemblance to Phytophthora were obtained from forest streams during routine monitoring for the EU quarantine forest pathogen Phytophthora ramorum in Ireland and Northern Ireland. Internal Transcribed Spacer (ITS) sequence analysis indicated that they belonged to two previously unknown species of Nothophytophthora, a recently erected sister genus of Phytophthora. Morphological and temperature-growth studies were carried out to characterise both new species. In addition, Bayesian and Maximum-Likelihood analyses of nuclear 5-loci and mitochondrial 3-loci datasets were performed to resolve the phylogenetic positions of the two new species. Both species were sterile, formed chlamydospores and partially caducous nonpapillate sporangia, and showed slower growth than any of the six known Nothophytophthora species. In all phylogenetic analyses both species formed distinct, strongly supported clades, closely related to N. chlamydospora and N. valdiviana from Chile. Based on their unique combination of morphological and physiological characters and their distinct phylogenetic positions the two new species are described as Nothophytophthora irlandica sp. nov. and N. lirii sp. nov. Their potential lifestyle and geographic origin are discussed.
T2  - PLoS One
T1  - Two new Nothophytophthora species from streams in Ireland and Northern Ireland: Nothophytophthora irlandica and N . lirii sp. nov.
IS  - 5
VL  - 16
DO  - 10.1371/journal.pone.0250527
UR  - conv_1557
ER  - 

@article{
author = "O'Hanlon, Richard and Destefanis, Maria and Milenković, Ivan and Tomsovsky, Michal and Janousek, Josef and Bellgard, Stanley E. and Weir, Bevan S. and Kudlacek, Tomas and Horta Jung, Marilia and Jung, Thomas",
year = "2021",
abstract = "Slow growing oomycete isolates with morphological resemblance to Phytophthora were obtained from forest streams during routine monitoring for the EU quarantine forest pathogen Phytophthora ramorum in Ireland and Northern Ireland. Internal Transcribed Spacer (ITS) sequence analysis indicated that they belonged to two previously unknown species of Nothophytophthora, a recently erected sister genus of Phytophthora. Morphological and temperature-growth studies were carried out to characterise both new species. In addition, Bayesian and Maximum-Likelihood analyses of nuclear 5-loci and mitochondrial 3-loci datasets were performed to resolve the phylogenetic positions of the two new species. Both species were sterile, formed chlamydospores and partially caducous nonpapillate sporangia, and showed slower growth than any of the six known Nothophytophthora species. In all phylogenetic analyses both species formed distinct, strongly supported clades, closely related to N. chlamydospora and N. valdiviana from Chile. Based on their unique combination of morphological and physiological characters and their distinct phylogenetic positions the two new species are described as Nothophytophthora irlandica sp. nov. and N. lirii sp. nov. Their potential lifestyle and geographic origin are discussed.",
journal = "PLoS One",
title = "Two new Nothophytophthora species from streams in Ireland and Northern Ireland: Nothophytophthora irlandica and N . lirii sp. nov.",
number = "5",
volume = "16",
doi = "10.1371/journal.pone.0250527",
url = "conv_1557"
}

O'Hanlon, R., Destefanis, M., Milenković, I., Tomsovsky, M., Janousek, J., Bellgard, S. E., Weir, B. S., Kudlacek, T., Horta Jung, M.,& Jung, T.. (2021). Two new Nothophytophthora species from streams in Ireland and Northern Ireland: Nothophytophthora irlandica and N . lirii sp. nov.. in PLoS One, 16(5).
https://doi.org/10.1371/journal.pone.0250527
conv_1557

O'Hanlon R, Destefanis M, Milenković I, Tomsovsky M, Janousek J, Bellgard SE, Weir BS, Kudlacek T, Horta Jung M, Jung T. Two new Nothophytophthora species from streams in Ireland and Northern Ireland: Nothophytophthora irlandica and N . lirii sp. nov.. in PLoS One. 2021;16(5).
doi:10.1371/journal.pone.0250527
conv_1557 .

O'Hanlon, Richard, Destefanis, Maria, Milenković, Ivan, Tomsovsky, Michal, Janousek, Josef, Bellgard, Stanley E., Weir, Bevan S., Kudlacek, Tomas, Horta Jung, Marilia, Jung, Thomas, "Two new Nothophytophthora species from streams in Ireland and Northern Ireland: Nothophytophthora irlandica and N . lirii sp. nov." in PLoS One, 16, no. 5 (2021),
https://doi.org/10.1371/journal.pone.0250527 .,
conv_1557 .

TY  - JOUR
AU  - Jung, Thomas
AU  - Scanu, Bruno
AU  - Brasier, Clive M.
AU  - Webber, Joan
AU  - Milenković, Ivan
AU  - Corcobado, Tamara
AU  - Tomsovsky, Michal
AU  - Panek, Matej
AU  - Bakonyi, Jozsef
AU  - Maia, Cristiana
AU  - Bacova, Aneta
AU  - Raco, Milica
AU  - Rees, Helen
AU  - Perez-Sierra, Ana
AU  - Horta Jung, Marilia
PY  - 2020
UR  - https://omorika.sfb.bg.ac.rs/handle/123456789/1137
AB  - In 2016 and 2017, surveys of Phytophthora diversity were performed in 25 natural and semi-natural forest stands and 16 rivers in temperate and subtropical montane and tropical lowland regions of Vietnam. Using baiting assays from soil samples and rivers and direct isolations from naturally fallen leaves, 13 described species, five informally designated taxa and 21 previously unknown taxa of Phytophthora were isolated from 58 of the 91 soil samples (63.7%) taken from the rhizosphere of 52 of the 64 woody plant species sampled (81.3%) in 20 forest stands (83.7%), and from all rivers: P. capensis, P. citricola VII, VIII, IX, X and XI, P. sp. botryosa-like 2, P. sp. meadii-like 1 and 2, P. sp. tropicalis-like 2 and P. sp. multivesiculata-like 1 from Phytophthora major phylogenetic Clade 2; P. castaneae and P. heveae from Clade 5; P. chlamydospora, P. gregata, P. sp. bitahaiensis-like and P. sp. sylvatica-like 1, 2 and 3 from Clade 6; P. cinnamomi (Pc), P. parvispora, P. attenuata, P. sp. attenuata-like 1, 2 and 3 and P. xheterohybrida from Clade 7; P. drechsleri, P. pseudocryptogea, P. ramorum (Pr) and P. sp. kelmania from Clade 8, P. macrochlamydospora, P. sp. xinsolita-like, P. sp. xkunnunara-like, P. sp. xvirginiana-like s.l. and three new taxa, P. sp. quininea-like, P. sp. xGrenada 3-like and P. sp. xPeru 4-like, from Clade 9; and P. sp. gallica-like 1 and 2 from Clade 10. The Al and A2 mating types of both Pc and Pr co-occurred. The A2 mating type of Pc was associated with severe dieback of montane forests in northern Vietnam. Most other Phytophthora species, including Pr, were not associated with obvious disease symptoms. It is concluded that (1) Vietnam is within the center of origin of most Phytophthora taxa found including Pc and Pr, and (2) Phytophthora clades 2, 5, 6, 7, 8, 9, and 10 are native to Indochina.
T2  - Forests
T1  - A Survey in Natural Forest Ecosystems of Vietnam Reveals High Diversity of both New and Described Phytophthora Taxa including P . ramorum
IS  - 1
VL  - 11
DO  - 10.3390/f11010093
UR  - conv_1479
ER  - 

@article{
author = "Jung, Thomas and Scanu, Bruno and Brasier, Clive M. and Webber, Joan and Milenković, Ivan and Corcobado, Tamara and Tomsovsky, Michal and Panek, Matej and Bakonyi, Jozsef and Maia, Cristiana and Bacova, Aneta and Raco, Milica and Rees, Helen and Perez-Sierra, Ana and Horta Jung, Marilia",
year = "2020",
abstract = "In 2016 and 2017, surveys of Phytophthora diversity were performed in 25 natural and semi-natural forest stands and 16 rivers in temperate and subtropical montane and tropical lowland regions of Vietnam. Using baiting assays from soil samples and rivers and direct isolations from naturally fallen leaves, 13 described species, five informally designated taxa and 21 previously unknown taxa of Phytophthora were isolated from 58 of the 91 soil samples (63.7%) taken from the rhizosphere of 52 of the 64 woody plant species sampled (81.3%) in 20 forest stands (83.7%), and from all rivers: P. capensis, P. citricola VII, VIII, IX, X and XI, P. sp. botryosa-like 2, P. sp. meadii-like 1 and 2, P. sp. tropicalis-like 2 and P. sp. multivesiculata-like 1 from Phytophthora major phylogenetic Clade 2; P. castaneae and P. heveae from Clade 5; P. chlamydospora, P. gregata, P. sp. bitahaiensis-like and P. sp. sylvatica-like 1, 2 and 3 from Clade 6; P. cinnamomi (Pc), P. parvispora, P. attenuata, P. sp. attenuata-like 1, 2 and 3 and P. xheterohybrida from Clade 7; P. drechsleri, P. pseudocryptogea, P. ramorum (Pr) and P. sp. kelmania from Clade 8, P. macrochlamydospora, P. sp. xinsolita-like, P. sp. xkunnunara-like, P. sp. xvirginiana-like s.l. and three new taxa, P. sp. quininea-like, P. sp. xGrenada 3-like and P. sp. xPeru 4-like, from Clade 9; and P. sp. gallica-like 1 and 2 from Clade 10. The Al and A2 mating types of both Pc and Pr co-occurred. The A2 mating type of Pc was associated with severe dieback of montane forests in northern Vietnam. Most other Phytophthora species, including Pr, were not associated with obvious disease symptoms. It is concluded that (1) Vietnam is within the center of origin of most Phytophthora taxa found including Pc and Pr, and (2) Phytophthora clades 2, 5, 6, 7, 8, 9, and 10 are native to Indochina.",
journal = "Forests",
title = "A Survey in Natural Forest Ecosystems of Vietnam Reveals High Diversity of both New and Described Phytophthora Taxa including P . ramorum",
number = "1",
volume = "11",
doi = "10.3390/f11010093",
url = "conv_1479"
}

Jung, T., Scanu, B., Brasier, C. M., Webber, J., Milenković, I., Corcobado, T., Tomsovsky, M., Panek, M., Bakonyi, J., Maia, C., Bacova, A., Raco, M., Rees, H., Perez-Sierra, A.,& Horta Jung, M.. (2020). A Survey in Natural Forest Ecosystems of Vietnam Reveals High Diversity of both New and Described Phytophthora Taxa including P . ramorum. in Forests, 11(1).
https://doi.org/10.3390/f11010093
conv_1479

Jung T, Scanu B, Brasier CM, Webber J, Milenković I, Corcobado T, Tomsovsky M, Panek M, Bakonyi J, Maia C, Bacova A, Raco M, Rees H, Perez-Sierra A, Horta Jung M. A Survey in Natural Forest Ecosystems of Vietnam Reveals High Diversity of both New and Described Phytophthora Taxa including P . ramorum. in Forests. 2020;11(1).
doi:10.3390/f11010093
conv_1479 .

Jung, Thomas, Scanu, Bruno, Brasier, Clive M., Webber, Joan, Milenković, Ivan, Corcobado, Tamara, Tomsovsky, Michal, Panek, Matej, Bakonyi, Jozsef, Maia, Cristiana, Bacova, Aneta, Raco, Milica, Rees, Helen, Perez-Sierra, Ana, Horta Jung, Marilia, "A Survey in Natural Forest Ecosystems of Vietnam Reveals High Diversity of both New and Described Phytophthora Taxa including P . ramorum" in Forests, 11, no. 1 (2020),
https://doi.org/10.3390/f11010093 .,
conv_1479 .

TY  - JOUR
AU  - Jung, T.
AU  - Orlikowski, L.
AU  - Henricot, B.
AU  - Abad-Campos, P.
AU  - Aday, A. G.
AU  - Aguin Casal, O.
AU  - Bakonyi, J.
AU  - Cacciola, S. O.
AU  - Cech, T.
AU  - Chavarriaga, D.
AU  - Corcobado, Tamara
AU  - Cravador, A.
AU  - Decourcelle, T.
AU  - Denton, G.
AU  - Diamandis, S.
AU  - Dogmus-Lehtijaervi, H. T.
AU  - Franceschini, A.
AU  - Ginetti, B.
AU  - Green, Samantha
AU  - Glavendekić, Milka
AU  - Hantula, J.
AU  - Hartmann, G.
AU  - Herrero, M.
AU  - Ivić, D.
AU  - Horta Jung, M.
AU  - Lilja, A.
AU  - Keča, Nenad
AU  - Kramarets, V.
AU  - Lyubenova, A.
AU  - Machado, H.
AU  - Magnano di San Lio, G.
AU  - Mansilla Vazquez, P. J.
AU  - Marcais, B.
AU  - Matsiakh, I.
AU  - Milenković, Ivan
AU  - Moricca, S.
AU  - Nagy, Zoltan
AU  - Nechwatal, J.
AU  - Olsson, C.
AU  - Oszako, Tomasz
AU  - Pane, A.
AU  - Paplomatas, E. J.
AU  - Pintos Varela, C.
AU  - Prospero, Simone
AU  - Rial Martinez, C.
AU  - Rigling, D.
AU  - Robin, Cecile
AU  - Rytkoenen, A.
AU  - Sanchez, M. E.
AU  - Sanz Ros, A. V.
AU  - Scanu, Bruno
AU  - Schlenzig, A.
AU  - Schumacher, J.
AU  - Slavov, S.
AU  - Solla, Alejandro
AU  - Sousa, E.
AU  - Stenlid, J.
AU  - Talgo, Venche
AU  - Tomić, Z.
AU  - Tsopelas, Panaghiotis
AU  - Vannini, A.
AU  - Vettraino, Anna Maria
AU  - Wenneker, M.
AU  - Woodward, S.
AU  - Perez-Sierra, Ana
PY  - 2016
UR  - https://omorika.sfb.bg.ac.rs/handle/123456789/723
AB  - An analysis of incidence of Phytophthora spp. in 732 European nurseries producing forest transplants, larger specimen trees, landscape plants and ornamentals, plus 2525 areas in which trees and shrubs were planted, is presented based on work conducted by 38 research groups in 23 European countries between 1972 and 2013. Forty-nine Phytophthora taxa were recorded in 670 nurseries (91.5%); within these nurseries, 1614 of 1992 nursery stands (81.0%) were infested, although most affected plants appeared healthy. In forest and landscape plantings, 56 Phytophthora taxa were recovered from 1667 of 2525 tested sites (66.0%). Affected plants frequently showed symptoms such as crown thinning, chlorosis and dieback caused by extensive fine root losses and/or collar rot. Many well-known highly damaging host-Phytophthora combinations were frequently detected but 297 and 407 new Phytophthora-host associations were also observed in nurseries and plantings, respectively. On average, 1.3 Phytophthora species/taxa per infested nursery stand and planting site were isolated. At least 47 of the 68 Phytophthora species/taxa detected in nurseries and plantings were exotic species several of which are considered well established in both nurseries and plantings in Europe. Seven known Phytophthora species/taxa were found for the first time in Europe, while 10 taxa had not been previously recorded from nurseries or plantings; in addition, 5 taxa were first detections on woody plant species. Seven Phytophthora taxa were previously unknown to science. The reasons for these failures of plant biosecurity in Europe, implications for forest and semi-natural ecosystems and possible ways to improve biosecurity are discussed.
T2  - Forest Pathology
T1  - Widespread Phytophthora infestations in European nurseries put forest, semi-natural and horticultural ecosystems at high risk of Phytophthora diseases
EP  - 163
IS  - 2
SP  - 134
VL  - 46
DO  - 10.1111/efp.12239
UR  - conv_1209
ER  - 

@article{
author = "Jung, T. and Orlikowski, L. and Henricot, B. and Abad-Campos, P. and Aday, A. G. and Aguin Casal, O. and Bakonyi, J. and Cacciola, S. O. and Cech, T. and Chavarriaga, D. and Corcobado, Tamara and Cravador, A. and Decourcelle, T. and Denton, G. and Diamandis, S. and Dogmus-Lehtijaervi, H. T. and Franceschini, A. and Ginetti, B. and Green, Samantha and Glavendekić, Milka and Hantula, J. and Hartmann, G. and Herrero, M. and Ivić, D. and Horta Jung, M. and Lilja, A. and Keča, Nenad and Kramarets, V. and Lyubenova, A. and Machado, H. and Magnano di San Lio, G. and Mansilla Vazquez, P. J. and Marcais, B. and Matsiakh, I. and Milenković, Ivan and Moricca, S. and Nagy, Zoltan and Nechwatal, J. and Olsson, C. and Oszako, Tomasz and Pane, A. and Paplomatas, E. J. and Pintos Varela, C. and Prospero, Simone and Rial Martinez, C. and Rigling, D. and Robin, Cecile and Rytkoenen, A. and Sanchez, M. E. and Sanz Ros, A. V. and Scanu, Bruno and Schlenzig, A. and Schumacher, J. and Slavov, S. and Solla, Alejandro and Sousa, E. and Stenlid, J. and Talgo, Venche and Tomić, Z. and Tsopelas, Panaghiotis and Vannini, A. and Vettraino, Anna Maria and Wenneker, M. and Woodward, S. and Perez-Sierra, Ana",
year = "2016",
abstract = "An analysis of incidence of Phytophthora spp. in 732 European nurseries producing forest transplants, larger specimen trees, landscape plants and ornamentals, plus 2525 areas in which trees and shrubs were planted, is presented based on work conducted by 38 research groups in 23 European countries between 1972 and 2013. Forty-nine Phytophthora taxa were recorded in 670 nurseries (91.5%); within these nurseries, 1614 of 1992 nursery stands (81.0%) were infested, although most affected plants appeared healthy. In forest and landscape plantings, 56 Phytophthora taxa were recovered from 1667 of 2525 tested sites (66.0%). Affected plants frequently showed symptoms such as crown thinning, chlorosis and dieback caused by extensive fine root losses and/or collar rot. Many well-known highly damaging host-Phytophthora combinations were frequently detected but 297 and 407 new Phytophthora-host associations were also observed in nurseries and plantings, respectively. On average, 1.3 Phytophthora species/taxa per infested nursery stand and planting site were isolated. At least 47 of the 68 Phytophthora species/taxa detected in nurseries and plantings were exotic species several of which are considered well established in both nurseries and plantings in Europe. Seven known Phytophthora species/taxa were found for the first time in Europe, while 10 taxa had not been previously recorded from nurseries or plantings; in addition, 5 taxa were first detections on woody plant species. Seven Phytophthora taxa were previously unknown to science. The reasons for these failures of plant biosecurity in Europe, implications for forest and semi-natural ecosystems and possible ways to improve biosecurity are discussed.",
journal = "Forest Pathology",
title = "Widespread Phytophthora infestations in European nurseries put forest, semi-natural and horticultural ecosystems at high risk of Phytophthora diseases",
pages = "163-134",
number = "2",
volume = "46",
doi = "10.1111/efp.12239",
url = "conv_1209"
}

Jung, T., Orlikowski, L., Henricot, B., Abad-Campos, P., Aday, A. G., Aguin Casal, O., Bakonyi, J., Cacciola, S. O., Cech, T., Chavarriaga, D., Corcobado, T., Cravador, A., Decourcelle, T., Denton, G., Diamandis, S., Dogmus-Lehtijaervi, H. T., Franceschini, A., Ginetti, B., Green, S., Glavendekić, M., Hantula, J., Hartmann, G., Herrero, M., Ivić, D., Horta Jung, M., Lilja, A., Keča, N., Kramarets, V., Lyubenova, A., Machado, H., Magnano di San Lio, G., Mansilla Vazquez, P. J., Marcais, B., Matsiakh, I., Milenković, I., Moricca, S., Nagy, Z., Nechwatal, J., Olsson, C., Oszako, T., Pane, A., Paplomatas, E. J., Pintos Varela, C., Prospero, S., Rial Martinez, C., Rigling, D., Robin, C., Rytkoenen, A., Sanchez, M. E., Sanz Ros, A. V., Scanu, B., Schlenzig, A., Schumacher, J., Slavov, S., Solla, A., Sousa, E., Stenlid, J., Talgo, V., Tomić, Z., Tsopelas, P., Vannini, A., Vettraino, A. M., Wenneker, M., Woodward, S.,& Perez-Sierra, A.. (2016). Widespread Phytophthora infestations in European nurseries put forest, semi-natural and horticultural ecosystems at high risk of Phytophthora diseases. in Forest Pathology, 46(2), 134-163.
https://doi.org/10.1111/efp.12239
conv_1209

Jung T, Orlikowski L, Henricot B, Abad-Campos P, Aday AG, Aguin Casal O, Bakonyi J, Cacciola SO, Cech T, Chavarriaga D, Corcobado T, Cravador A, Decourcelle T, Denton G, Diamandis S, Dogmus-Lehtijaervi HT, Franceschini A, Ginetti B, Green S, Glavendekić M, Hantula J, Hartmann G, Herrero M, Ivić D, Horta Jung M, Lilja A, Keča N, Kramarets V, Lyubenova A, Machado H, Magnano di San Lio G, Mansilla Vazquez PJ, Marcais B, Matsiakh I, Milenković I, Moricca S, Nagy Z, Nechwatal J, Olsson C, Oszako T, Pane A, Paplomatas EJ, Pintos Varela C, Prospero S, Rial Martinez C, Rigling D, Robin C, Rytkoenen A, Sanchez ME, Sanz Ros AV, Scanu B, Schlenzig A, Schumacher J, Slavov S, Solla A, Sousa E, Stenlid J, Talgo V, Tomić Z, Tsopelas P, Vannini A, Vettraino AM, Wenneker M, Woodward S, Perez-Sierra A. Widespread Phytophthora infestations in European nurseries put forest, semi-natural and horticultural ecosystems at high risk of Phytophthora diseases. in Forest Pathology. 2016;46(2):134-163.
doi:10.1111/efp.12239
conv_1209 .

Jung, T., Orlikowski, L., Henricot, B., Abad-Campos, P., Aday, A. G., Aguin Casal, O., Bakonyi, J., Cacciola, S. O., Cech, T., Chavarriaga, D., Corcobado, Tamara, Cravador, A., Decourcelle, T., Denton, G., Diamandis, S., Dogmus-Lehtijaervi, H. T., Franceschini, A., Ginetti, B., Green, Samantha, Glavendekić, Milka, Hantula, J., Hartmann, G., Herrero, M., Ivić, D., Horta Jung, M., Lilja, A., Keča, Nenad, Kramarets, V., Lyubenova, A., Machado, H., Magnano di San Lio, G., Mansilla Vazquez, P. J., Marcais, B., Matsiakh, I., Milenković, Ivan, Moricca, S., Nagy, Zoltan, Nechwatal, J., Olsson, C., Oszako, Tomasz, Pane, A., Paplomatas, E. J., Pintos Varela, C., Prospero, Simone, Rial Martinez, C., Rigling, D., Robin, Cecile, Rytkoenen, A., Sanchez, M. E., Sanz Ros, A. V., Scanu, Bruno, Schlenzig, A., Schumacher, J., Slavov, S., Solla, Alejandro, Sousa, E., Stenlid, J., Talgo, Venche, Tomić, Z., Tsopelas, Panaghiotis, Vannini, A., Vettraino, Anna Maria, Wenneker, M., Woodward, S., Perez-Sierra, Ana, "Widespread Phytophthora infestations in European nurseries put forest, semi-natural and horticultural ecosystems at high risk of Phytophthora diseases" in Forest Pathology, 46, no. 2 (2016):134-163,
https://doi.org/10.1111/efp.12239 .,
conv_1209 .