TY  - JOUR
AU  - Jung, T.
AU  - Milenković, Ivan
AU  - Balci, Y.
AU  - Janousek, J.
AU  - Kudlacek, Tomas
AU  - Nagy, Zoltan
AU  - Baharuddin, B.
AU  - Bakonyi, J.
AU  - Broders, Kirk D.
AU  - Cacciola, S. O.
AU  - Chang, T. -T.
AU  - Chi, N. M.
AU  - Corcobado, Tamara
AU  - Cravador, A.
AU  - Đorđević, B.
AU  - Duran, A.
AU  - Ferreira, M.
AU  - Fu, C. -H.
AU  - Garcia, L.
AU  - Hieno, A.
AU  - Ho, H. -H.
AU  - Hong, C.
AU  - Junaid, M.
AU  - Kageyama, K.
AU  - Kuswinanti, T.
AU  - Maia, C.
AU  - Majek, Tomas
AU  - Masuya, H.
AU  - Lio, G. Magnano di San
AU  - Mendieta-Araica, B.
AU  - Nasri, N.
AU  - Oliveira, L. S. S.
AU  - Pane, A.
AU  - Perez-Sierra, Ana
AU  - Rosmana, A.
AU  - von Stowasser, E. Sanfuentes
AU  - Scanu, Bruno
AU  - Singh, R.
AU  - Stanivuković, Zoran
AU  - Tarigan, Marthin
AU  - Thu, P. Q.
AU  - Tomić, Z.
AU  - Tomsovsky, M.
AU  - Uematsu, Seiji
AU  - Webber, Joan
AU  - Zeng, H. -C.
AU  - Zheng, F. -C.
AU  - Brasier, Clive M.
AU  - Horta Jung, Marilia
PY  - 2024
UR  - https://omorika.sfb.bg.ac.rs/handle/123456789/1492
AB  - During 25 surveys of global Phytophthora diversity, conducted between 1998 and 2020, 43 new species were detected in natural ecosystems and, occasionally, in nurseries and outplantings in Europe, Southeast and East Asia and the Americas. Based on a multigene phylogeny of nine nuclear and four mitochondrial gene regions they were assigned to five of the six known subclades, 2a-c, e and f, of Phytophthora major Clade 2 and the new subclade 2g. The evolutionary history of the Clade appears to have involved the pre-Gondwanan divergence of three extant subclades, 2c, 2e and 2f, all having disjunct natural distributions on separate continents and comprising species with a soilborne and aquatic lifestyle and, in addition, a few partially aerial species in Clade 2c; and the post-Gondwanan evolution of subclades 2a and 2g in Southeast/East Asia and 2b in South America, respectively, from their common ancestor. Species in Clade 2g are soilborne whereas Clade 2b comprises both soil-inhabiting and aerial species. Clade 2a has evolved further towards an aerial lifestyle comprising only species which are predominantly or partially airborne. Based on high nuclear heterozygosity levels ca. 38 % of the taxa in Clades 2a and 2b could be some form of hybrid, and the hybridity may be favoured by an A1/A2 breeding system and an aerial life style. Circumstantial evidence suggests the now 93 described species and informally designated taxa in Clade 2 result from both allopatric non-adaptive and sympatric adaptive radiations. They represent most morphological and physiological characters, breeding systems, lifestyles and forms of host specialism found across the Phytophthora clades as a whole, demonstrating the strong biological cohesiveness of the genus. The finding of 43 previously unknown species from a single Phytophthora clade highlight a critical lack of information on the scale of the unknown pathogen threats to forests and natural ecosystems, underlining the risk of basing plant biosecurity protocols mainly on lists of named organisms. More surveys in natural ecosystems of yet unsurveyed regions in Africa, Asia, Central and South America are needed to unveil the full diversity of the clade and the factors driving diversity, speciation and adaptation in Phytophthora.
T2  - Studies in Mycology
T1  - Worldwide forest surveys reveal forty-three new species in Phytophthora major Clade 2 with fundamental implications for the evolution and biogeography of the genus and global plant biosecurity
EP  - 388
IS  - 107
SP  - 251
DO  - 10.3114/sim.2024.107.04
UR  - conv_1770
ER  - 

@article{
author = "Jung, T. and Milenković, Ivan and Balci, Y. and Janousek, J. and Kudlacek, Tomas and Nagy, Zoltan and Baharuddin, B. and Bakonyi, J. and Broders, Kirk D. and Cacciola, S. O. and Chang, T. -T. and Chi, N. M. and Corcobado, Tamara and Cravador, A. and Đorđević, B. and Duran, A. and Ferreira, M. and Fu, C. -H. and Garcia, L. and Hieno, A. and Ho, H. -H. and Hong, C. and Junaid, M. and Kageyama, K. and Kuswinanti, T. and Maia, C. and Majek, Tomas and Masuya, H. and Lio, G. Magnano di San and Mendieta-Araica, B. and Nasri, N. and Oliveira, L. S. S. and Pane, A. and Perez-Sierra, Ana and Rosmana, A. and von Stowasser, E. Sanfuentes and Scanu, Bruno and Singh, R. and Stanivuković, Zoran and Tarigan, Marthin and Thu, P. Q. and Tomić, Z. and Tomsovsky, M. and Uematsu, Seiji and Webber, Joan and Zeng, H. -C. and Zheng, F. -C. and Brasier, Clive M. and Horta Jung, Marilia",
year = "2024",
abstract = "During 25 surveys of global Phytophthora diversity, conducted between 1998 and 2020, 43 new species were detected in natural ecosystems and, occasionally, in nurseries and outplantings in Europe, Southeast and East Asia and the Americas. Based on a multigene phylogeny of nine nuclear and four mitochondrial gene regions they were assigned to five of the six known subclades, 2a-c, e and f, of Phytophthora major Clade 2 and the new subclade 2g. The evolutionary history of the Clade appears to have involved the pre-Gondwanan divergence of three extant subclades, 2c, 2e and 2f, all having disjunct natural distributions on separate continents and comprising species with a soilborne and aquatic lifestyle and, in addition, a few partially aerial species in Clade 2c; and the post-Gondwanan evolution of subclades 2a and 2g in Southeast/East Asia and 2b in South America, respectively, from their common ancestor. Species in Clade 2g are soilborne whereas Clade 2b comprises both soil-inhabiting and aerial species. Clade 2a has evolved further towards an aerial lifestyle comprising only species which are predominantly or partially airborne. Based on high nuclear heterozygosity levels ca. 38 % of the taxa in Clades 2a and 2b could be some form of hybrid, and the hybridity may be favoured by an A1/A2 breeding system and an aerial life style. Circumstantial evidence suggests the now 93 described species and informally designated taxa in Clade 2 result from both allopatric non-adaptive and sympatric adaptive radiations. They represent most morphological and physiological characters, breeding systems, lifestyles and forms of host specialism found across the Phytophthora clades as a whole, demonstrating the strong biological cohesiveness of the genus. The finding of 43 previously unknown species from a single Phytophthora clade highlight a critical lack of information on the scale of the unknown pathogen threats to forests and natural ecosystems, underlining the risk of basing plant biosecurity protocols mainly on lists of named organisms. More surveys in natural ecosystems of yet unsurveyed regions in Africa, Asia, Central and South America are needed to unveil the full diversity of the clade and the factors driving diversity, speciation and adaptation in Phytophthora.",
journal = "Studies in Mycology",
title = "Worldwide forest surveys reveal forty-three new species in Phytophthora major Clade 2 with fundamental implications for the evolution and biogeography of the genus and global plant biosecurity",
pages = "388-251",
number = "107",
doi = "10.3114/sim.2024.107.04",
url = "conv_1770"
}

Jung, T., Milenković, I., Balci, Y., Janousek, J., Kudlacek, T., Nagy, Z., Baharuddin, B., Bakonyi, J., Broders, K. D., Cacciola, S. O., Chang, T. -T., Chi, N. M., Corcobado, T., Cravador, A., Đorđević, B., Duran, A., Ferreira, M., Fu, C. -H., Garcia, L., Hieno, A., Ho, H. -H., Hong, C., Junaid, M., Kageyama, K., Kuswinanti, T., Maia, C., Majek, T., Masuya, H., Lio, G. M. d. S., Mendieta-Araica, B., Nasri, N., Oliveira, L. S. S., Pane, A., Perez-Sierra, A., Rosmana, A., von Stowasser, E. S., Scanu, B., Singh, R., Stanivuković, Z., Tarigan, M., Thu, P. Q., Tomić, Z., Tomsovsky, M., Uematsu, S., Webber, J., Zeng, H. -C., Zheng, F. -C., Brasier, C. M.,& Horta Jung, M.. (2024). Worldwide forest surveys reveal forty-three new species in Phytophthora major Clade 2 with fundamental implications for the evolution and biogeography of the genus and global plant biosecurity. in Studies in Mycology(107), 251-388.
https://doi.org/10.3114/sim.2024.107.04
conv_1770

Jung T, Milenković I, Balci Y, Janousek J, Kudlacek T, Nagy Z, Baharuddin B, Bakonyi J, Broders KD, Cacciola SO, Chang T-, Chi NM, Corcobado T, Cravador A, Đorđević B, Duran A, Ferreira M, Fu C-, Garcia L, Hieno A, Ho H-, Hong C, Junaid M, Kageyama K, Kuswinanti T, Maia C, Majek T, Masuya H, Lio GMDS, Mendieta-Araica B, Nasri N, Oliveira LSS, Pane A, Perez-Sierra A, Rosmana A, von Stowasser ES, Scanu B, Singh R, Stanivuković Z, Tarigan M, Thu PQ, Tomić Z, Tomsovsky M, Uematsu S, Webber J, Zeng H-, Zheng F-, Brasier CM, Horta Jung M. Worldwide forest surveys reveal forty-three new species in Phytophthora major Clade 2 with fundamental implications for the evolution and biogeography of the genus and global plant biosecurity. in Studies in Mycology. 2024;(107):251-388.
doi:10.3114/sim.2024.107.04
conv_1770 .

Jung, T., Milenković, Ivan, Balci, Y., Janousek, J., Kudlacek, Tomas, Nagy, Zoltan, Baharuddin, B., Bakonyi, J., Broders, Kirk D., Cacciola, S. O., Chang, T. -T., Chi, N. M., Corcobado, Tamara, Cravador, A., Đorđević, B., Duran, A., Ferreira, M., Fu, C. -H., Garcia, L., Hieno, A., Ho, H. -H., Hong, C., Junaid, M., Kageyama, K., Kuswinanti, T., Maia, C., Majek, Tomas, Masuya, H., Lio, G. Magnano di San, Mendieta-Araica, B., Nasri, N., Oliveira, L. S. S., Pane, A., Perez-Sierra, Ana, Rosmana, A., von Stowasser, E. Sanfuentes, Scanu, Bruno, Singh, R., Stanivuković, Zoran, Tarigan, Marthin, Thu, P. Q., Tomić, Z., Tomsovsky, M., Uematsu, Seiji, Webber, Joan, Zeng, H. -C., Zheng, F. -C., Brasier, Clive M., Horta Jung, Marilia, "Worldwide forest surveys reveal forty-three new species in Phytophthora major Clade 2 with fundamental implications for the evolution and biogeography of the genus and global plant biosecurity" in Studies in Mycology, no. 107 (2024):251-388,
https://doi.org/10.3114/sim.2024.107.04 .,
conv_1770 .

TY  - JOUR
AU  - Jung, Thomas
AU  - Balci, Yilmaz
AU  - Broders, Kirk D.
AU  - Milenković, Ivan
AU  - Janousek, Josef
AU  - Kudlacek, Tomas
AU  - Đorđević, Biljana
AU  - Horta Jung, Marilia
PY  - 2023
UR  - https://omorika.sfb.bg.ac.rs/handle/123456789/1383
AB  - During a survey of Phytophthora diversity in Panama, fast-growing oomycete isolates were obtained from naturally fallen leaves of an unidentified tree species in a tropical cloud forest. Phylogenetic analyses of sequences from the nuclear ITS, LSU and beta tub loci and the mitochondrial cox1 and cox2 genes revealed that they belong to a new species of a new genus, officially described here as Synchrospora gen. nov., which resided as a basal genus within the Peronosporaceae. The type species S. medusiformis has unique morphological characteristics. The sporangiophores show determinate growth, multifurcating at the end, forming a stunted, candelabra-like apex from which multiple (8 to  gt 100) long, curved pedicels are growing simultaneously in a medusa-like way. The caducous papillate sporangia mature and are shed synchronously. The breeding system is homothallic, hence more inbreeding than outcrossing, with smooth-walled oogonia, plerotic oospores and paragynous antheridia. Optimum and maximum temperatures for growth are 22.5 and 25-27.5 degrees C, consistent with its natural cloud forest habitat. It is concluded that S. medusiformis as adapted to a lifestyle as a canopy-dwelling leaf pathogen in tropical cloud forests. More oomycete explorations in the canopies of tropical rainforests and cloud forests are needed to elucidate the diversity, host associations and ecological roles of oomycetes and, in particular, S. medusiformis and possibly other Synchrospora taxa in this as yet under-explored habitat.
T2  - Journal of Fungi
T1  - Synchrospora gen. nov., a New Peronosporaceae Genus with Aerial Lifestyle from a Natural Cloud Forest in Panama
IS  - 5
VL  - 9
DO  - 10.3390/jof9050517
UR  - conv_1713
ER  - 

@article{
author = "Jung, Thomas and Balci, Yilmaz and Broders, Kirk D. and Milenković, Ivan and Janousek, Josef and Kudlacek, Tomas and Đorđević, Biljana and Horta Jung, Marilia",
year = "2023",
abstract = "During a survey of Phytophthora diversity in Panama, fast-growing oomycete isolates were obtained from naturally fallen leaves of an unidentified tree species in a tropical cloud forest. Phylogenetic analyses of sequences from the nuclear ITS, LSU and beta tub loci and the mitochondrial cox1 and cox2 genes revealed that they belong to a new species of a new genus, officially described here as Synchrospora gen. nov., which resided as a basal genus within the Peronosporaceae. The type species S. medusiformis has unique morphological characteristics. The sporangiophores show determinate growth, multifurcating at the end, forming a stunted, candelabra-like apex from which multiple (8 to  gt 100) long, curved pedicels are growing simultaneously in a medusa-like way. The caducous papillate sporangia mature and are shed synchronously. The breeding system is homothallic, hence more inbreeding than outcrossing, with smooth-walled oogonia, plerotic oospores and paragynous antheridia. Optimum and maximum temperatures for growth are 22.5 and 25-27.5 degrees C, consistent with its natural cloud forest habitat. It is concluded that S. medusiformis as adapted to a lifestyle as a canopy-dwelling leaf pathogen in tropical cloud forests. More oomycete explorations in the canopies of tropical rainforests and cloud forests are needed to elucidate the diversity, host associations and ecological roles of oomycetes and, in particular, S. medusiformis and possibly other Synchrospora taxa in this as yet under-explored habitat.",
journal = "Journal of Fungi",
title = "Synchrospora gen. nov., a New Peronosporaceae Genus with Aerial Lifestyle from a Natural Cloud Forest in Panama",
number = "5",
volume = "9",
doi = "10.3390/jof9050517",
url = "conv_1713"
}

Jung, T., Balci, Y., Broders, K. D., Milenković, I., Janousek, J., Kudlacek, T., Đorđević, B.,& Horta Jung, M.. (2023). Synchrospora gen. nov., a New Peronosporaceae Genus with Aerial Lifestyle from a Natural Cloud Forest in Panama. in Journal of Fungi, 9(5).
https://doi.org/10.3390/jof9050517
conv_1713

Jung T, Balci Y, Broders KD, Milenković I, Janousek J, Kudlacek T, Đorđević B, Horta Jung M. Synchrospora gen. nov., a New Peronosporaceae Genus with Aerial Lifestyle from a Natural Cloud Forest in Panama. in Journal of Fungi. 2023;9(5).
doi:10.3390/jof9050517
conv_1713 .

Jung, Thomas, Balci, Yilmaz, Broders, Kirk D., Milenković, Ivan, Janousek, Josef, Kudlacek, Tomas, Đorđević, Biljana, Horta Jung, Marilia, "Synchrospora gen. nov., a New Peronosporaceae Genus with Aerial Lifestyle from a Natural Cloud Forest in Panama" in Journal of Fungi, 9, no. 5 (2023),
https://doi.org/10.3390/jof9050517 .,
conv_1713 .

TY  - JOUR
AU  - Corcobado, Tamara
AU  - Milenković, Ivan
AU  - Saiz-Fernandez, Inigo
AU  - Kudlacek, Tomas
AU  - Plichta, Roman
AU  - Majek, Tomas
AU  - Bacova, Aneta
AU  - Datkova, Henrieta
AU  - Dalya, Laszlo Benedek
AU  - Trifković, Miloš
AU  - Mureddu, Davide
AU  - Racko, Vladimir
AU  - Kardosova, Monika
AU  - Durković, Jaroslav
AU  - Rattunde, Roman
AU  - Jung, Thomas
PY  - 2022
UR  - https://omorika.sfb.bg.ac.rs/handle/123456789/1322
AB  - Phytophthora infections are followed by histological alterations, physiological and metabolomic adjustments in the host but very few studies contemplate these changes simultaneously. Fagus sylvatica seedlings were inoculated with A1 and A2 mating types of the heterothallic P. xcambivora and with the homothallic P. plurivora to identify plant physiological and metabolomic changes accompanying microscope observations of the colonization process one, two and three weeks after inoculation. Phytophthora plurivora-infected plants died at a faster pace than those inoculated with P. xcambivora and showed higher mortality than P. xcambivora A1-infected plants. Phytophthora xcambivora A1 and A2 caused similar progression and total rate of mortality. Most differences in the physiological parameters between inoculated and non-inoculated plants were detected two weeks after inoculation. Alterations in primary and secondary metabolites in roots and leaves were demonstrated for all the inoculated plants two and three weeks after inoculation. The results indicate that P. plurivora is more aggressive to Fagus sylvatica seedlings than both mating types of P. xcambivora while P. xcambivora A1 showed a slower infection mode than P. xcambivora A2 and led to minor plant metabolomic adjustments.
T2  - Journal of Fungi
T1  - Metabolomic and Physiological Changes in Fagus sylvatica Seedlings Infected with Phytophthora plurivora and the A1 and A2 Mating Types of P. xcambivora
IS  - 3
VL  - 8
DO  - 10.3390/jof8030298
UR  - conv_1623
ER  - 

@article{
author = "Corcobado, Tamara and Milenković, Ivan and Saiz-Fernandez, Inigo and Kudlacek, Tomas and Plichta, Roman and Majek, Tomas and Bacova, Aneta and Datkova, Henrieta and Dalya, Laszlo Benedek and Trifković, Miloš and Mureddu, Davide and Racko, Vladimir and Kardosova, Monika and Durković, Jaroslav and Rattunde, Roman and Jung, Thomas",
year = "2022",
abstract = "Phytophthora infections are followed by histological alterations, physiological and metabolomic adjustments in the host but very few studies contemplate these changes simultaneously. Fagus sylvatica seedlings were inoculated with A1 and A2 mating types of the heterothallic P. xcambivora and with the homothallic P. plurivora to identify plant physiological and metabolomic changes accompanying microscope observations of the colonization process one, two and three weeks after inoculation. Phytophthora plurivora-infected plants died at a faster pace than those inoculated with P. xcambivora and showed higher mortality than P. xcambivora A1-infected plants. Phytophthora xcambivora A1 and A2 caused similar progression and total rate of mortality. Most differences in the physiological parameters between inoculated and non-inoculated plants were detected two weeks after inoculation. Alterations in primary and secondary metabolites in roots and leaves were demonstrated for all the inoculated plants two and three weeks after inoculation. The results indicate that P. plurivora is more aggressive to Fagus sylvatica seedlings than both mating types of P. xcambivora while P. xcambivora A1 showed a slower infection mode than P. xcambivora A2 and led to minor plant metabolomic adjustments.",
journal = "Journal of Fungi",
title = "Metabolomic and Physiological Changes in Fagus sylvatica Seedlings Infected with Phytophthora plurivora and the A1 and A2 Mating Types of P. xcambivora",
number = "3",
volume = "8",
doi = "10.3390/jof8030298",
url = "conv_1623"
}

Corcobado, T., Milenković, I., Saiz-Fernandez, I., Kudlacek, T., Plichta, R., Majek, T., Bacova, A., Datkova, H., Dalya, L. B., Trifković, M., Mureddu, D., Racko, V., Kardosova, M., Durković, J., Rattunde, R.,& Jung, T.. (2022). Metabolomic and Physiological Changes in Fagus sylvatica Seedlings Infected with Phytophthora plurivora and the A1 and A2 Mating Types of P. xcambivora. in Journal of Fungi, 8(3).
https://doi.org/10.3390/jof8030298
conv_1623

Corcobado T, Milenković I, Saiz-Fernandez I, Kudlacek T, Plichta R, Majek T, Bacova A, Datkova H, Dalya LB, Trifković M, Mureddu D, Racko V, Kardosova M, Durković J, Rattunde R, Jung T. Metabolomic and Physiological Changes in Fagus sylvatica Seedlings Infected with Phytophthora plurivora and the A1 and A2 Mating Types of P. xcambivora. in Journal of Fungi. 2022;8(3).
doi:10.3390/jof8030298
conv_1623 .

Corcobado, Tamara, Milenković, Ivan, Saiz-Fernandez, Inigo, Kudlacek, Tomas, Plichta, Roman, Majek, Tomas, Bacova, Aneta, Datkova, Henrieta, Dalya, Laszlo Benedek, Trifković, Miloš, Mureddu, Davide, Racko, Vladimir, Kardosova, Monika, Durković, Jaroslav, Rattunde, Roman, Jung, Thomas, "Metabolomic and Physiological Changes in Fagus sylvatica Seedlings Infected with Phytophthora plurivora and the A1 and A2 Mating Types of P. xcambivora" in Journal of Fungi, 8, no. 3 (2022),
https://doi.org/10.3390/jof8030298 .,
conv_1623 .

TY  - JOUR
AU  - Jung, T.
AU  - Milenković, Ivan
AU  - Corcobado, Tamara
AU  - Majek, Tomas
AU  - Janousek, J.
AU  - Kudlacek, Tomas
AU  - Tomsovsky, M.
AU  - Nagy, Zoltan
AU  - Duran, A.
AU  - Tarigan, Marthin
AU  - von Stowasser, E. Sanfuentes
AU  - Singh, R.
AU  - Ferreira, M.
AU  - Webber, Joan
AU  - Scanu, Bruno
AU  - Chi, N. M.
AU  - Thu, P. Q.
AU  - Junaid, M.
AU  - Rosmana, A.
AU  - Baharuddin, B.
AU  - Kuswinanti, T.
AU  - Nasri, N.
AU  - Kageyama, K.
AU  - Hieno, A.
AU  - Masuya, H.
AU  - Uematsu, Seiji
AU  - Oliva, J.
AU  - Redondo, Miguel A.
AU  - Maia, C.
AU  - Matsiakh, I.
AU  - Kramarets, V.
AU  - O'Hanlon, R.
AU  - Tomić, Z.
AU  - Brasier, Clive M.
AU  - Horta Jung, Marilia
PY  - 2022
UR  - https://omorika.sfb.bg.ac.rs/handle/123456789/1314
AB  - During extensive surveys of global Phytophthora diversity 14 new species detected in natural ecosystems in Chile, Indonesia, USA (Louisiana), Sweden, Ukraine and Vietnam were assigned to Phytophthora major Clade 10 based on a multigene phylogeny of nine nuclear and three mitochondrial gene regions. Clade 10 now comprises three subclades. Subclades 10a and 10b contain species with nonpapillate sporangia, a range of breeding systems and a mainly soil-and waterborne lifestyle. These include the previously described P. afrocarpa, P. gallica and P. intercalaris and eight of the new species: P. ludoviciana, P. procera, P. pseudogallica, P. scandinavica, P. subarctica, P. tenui- mura, P. tonkinensis and P. ukrainensis. In contrast, all species in Subclade 10c have papillate sporangia and are self-fertile (or homothallic) with an aerial lifestyle including the known P. boehmeriae, P. gondwanensis, P. kernoviae and P. morindae and the new species P. celebensis, P. chilensis, P. javanensis, P. multiglobulosa, P. pseudochilensis and P. pseudokernoviae. All new Phytophthora species differed from each other and from related species by their unique combinations of morphological characters, breeding systems, cardinal temperatures and growth rates. The biogeography and evolutionary history of Clade 10 are discussed. We propose that the three subclades originated via the early divergence of pre-Gondwanan ancestors  gt  175 Mya into water-and soilborne and aerially dispersed lineages and subsequently underwent multiple allopatric and sympatric radiations during their global spread.
T2  - Persoonia
T1  - Extensive morphological and behavioural diversity among fourteen new and seven described species in Phytophthora Clade 10 and its evolutionary implications
EP  - 57
SP  - 1
VL  - 49
DO  - 10.3767/persoonia.2022.49.01
UR  - conv_1684
ER  - 

@article{
author = "Jung, T. and Milenković, Ivan and Corcobado, Tamara and Majek, Tomas and Janousek, J. and Kudlacek, Tomas and Tomsovsky, M. and Nagy, Zoltan and Duran, A. and Tarigan, Marthin and von Stowasser, E. Sanfuentes and Singh, R. and Ferreira, M. and Webber, Joan and Scanu, Bruno and Chi, N. M. and Thu, P. Q. and Junaid, M. and Rosmana, A. and Baharuddin, B. and Kuswinanti, T. and Nasri, N. and Kageyama, K. and Hieno, A. and Masuya, H. and Uematsu, Seiji and Oliva, J. and Redondo, Miguel A. and Maia, C. and Matsiakh, I. and Kramarets, V. and O'Hanlon, R. and Tomić, Z. and Brasier, Clive M. and Horta Jung, Marilia",
year = "2022",
abstract = "During extensive surveys of global Phytophthora diversity 14 new species detected in natural ecosystems in Chile, Indonesia, USA (Louisiana), Sweden, Ukraine and Vietnam were assigned to Phytophthora major Clade 10 based on a multigene phylogeny of nine nuclear and three mitochondrial gene regions. Clade 10 now comprises three subclades. Subclades 10a and 10b contain species with nonpapillate sporangia, a range of breeding systems and a mainly soil-and waterborne lifestyle. These include the previously described P. afrocarpa, P. gallica and P. intercalaris and eight of the new species: P. ludoviciana, P. procera, P. pseudogallica, P. scandinavica, P. subarctica, P. tenui- mura, P. tonkinensis and P. ukrainensis. In contrast, all species in Subclade 10c have papillate sporangia and are self-fertile (or homothallic) with an aerial lifestyle including the known P. boehmeriae, P. gondwanensis, P. kernoviae and P. morindae and the new species P. celebensis, P. chilensis, P. javanensis, P. multiglobulosa, P. pseudochilensis and P. pseudokernoviae. All new Phytophthora species differed from each other and from related species by their unique combinations of morphological characters, breeding systems, cardinal temperatures and growth rates. The biogeography and evolutionary history of Clade 10 are discussed. We propose that the three subclades originated via the early divergence of pre-Gondwanan ancestors  gt  175 Mya into water-and soilborne and aerially dispersed lineages and subsequently underwent multiple allopatric and sympatric radiations during their global spread.",
journal = "Persoonia",
title = "Extensive morphological and behavioural diversity among fourteen new and seven described species in Phytophthora Clade 10 and its evolutionary implications",
pages = "57-1",
volume = "49",
doi = "10.3767/persoonia.2022.49.01",
url = "conv_1684"
}

Jung, T., Milenković, I., Corcobado, T., Majek, T., Janousek, J., Kudlacek, T., Tomsovsky, M., Nagy, Z., Duran, A., Tarigan, M., von Stowasser, E. S., Singh, R., Ferreira, M., Webber, J., Scanu, B., Chi, N. M., Thu, P. Q., Junaid, M., Rosmana, A., Baharuddin, B., Kuswinanti, T., Nasri, N., Kageyama, K., Hieno, A., Masuya, H., Uematsu, S., Oliva, J., Redondo, M. A., Maia, C., Matsiakh, I., Kramarets, V., O'Hanlon, R., Tomić, Z., Brasier, C. M.,& Horta Jung, M.. (2022). Extensive morphological and behavioural diversity among fourteen new and seven described species in Phytophthora Clade 10 and its evolutionary implications. in Persoonia, 49, 1-57.
https://doi.org/10.3767/persoonia.2022.49.01
conv_1684

Jung T, Milenković I, Corcobado T, Majek T, Janousek J, Kudlacek T, Tomsovsky M, Nagy Z, Duran A, Tarigan M, von Stowasser ES, Singh R, Ferreira M, Webber J, Scanu B, Chi NM, Thu PQ, Junaid M, Rosmana A, Baharuddin B, Kuswinanti T, Nasri N, Kageyama K, Hieno A, Masuya H, Uematsu S, Oliva J, Redondo MA, Maia C, Matsiakh I, Kramarets V, O'Hanlon R, Tomić Z, Brasier CM, Horta Jung M. Extensive morphological and behavioural diversity among fourteen new and seven described species in Phytophthora Clade 10 and its evolutionary implications. in Persoonia. 2022;49:1-57.
doi:10.3767/persoonia.2022.49.01
conv_1684 .

Jung, T., Milenković, Ivan, Corcobado, Tamara, Majek, Tomas, Janousek, J., Kudlacek, Tomas, Tomsovsky, M., Nagy, Zoltan, Duran, A., Tarigan, Marthin, von Stowasser, E. Sanfuentes, Singh, R., Ferreira, M., Webber, Joan, Scanu, Bruno, Chi, N. M., Thu, P. Q., Junaid, M., Rosmana, A., Baharuddin, B., Kuswinanti, T., Nasri, N., Kageyama, K., Hieno, A., Masuya, H., Uematsu, Seiji, Oliva, J., Redondo, Miguel A., Maia, C., Matsiakh, I., Kramarets, V., O'Hanlon, R., Tomić, Z., Brasier, Clive M., Horta Jung, Marilia, "Extensive morphological and behavioural diversity among fourteen new and seven described species in Phytophthora Clade 10 and its evolutionary implications" in Persoonia, 49 (2022):1-57,
https://doi.org/10.3767/persoonia.2022.49.01 .,
conv_1684 .

TY  - JOUR
AU  - Jung, Thomas
AU  - Horta Jung, Marilia
AU  - Webber, Joan
AU  - Kageyama, Koji
AU  - Hieno, Ayaka
AU  - Masuya, Hayato
AU  - Uematsu, Seiji
AU  - Perez-Sierra, Ana
AU  - Harris, Anna R.
AU  - Forster, Jack
AU  - Rees, Helen
AU  - Scanu, Bruno
AU  - Patra, Sneha
AU  - Kudlacek, Tomas
AU  - Janousek, Josef
AU  - Corcobado, Tamara
AU  - Milenković, Ivan
AU  - Nagy, Zoltan
AU  - Csorba, Ildiko
AU  - Bakonyi, Jozsef
AU  - Brasier, Clive M.
PY  - 2021
UR  - https://omorika.sfb.bg.ac.rs/handle/123456789/1217
AB  - As global plant trade expands, tree disease epidemics caused by pathogen introductions are increasing. Since ca 2000, the introduced oomycete Phytophthora ramorum has caused devastating epidemics in Europe and North America, spreading as four ancient clonal lineages, each of a single mating type, suggesting different geographical origins. We surveyed laurosilva forests for P. ramorum around Fansipan mountain on the Vietnam-China border and on Shikoku and Kyushu islands, southwest Japan. The surveys yielded 71 P. ramorum isolates which we assigned to eight new lineages, IC1 to IC5 from Vietnam and NP1 to NP3 from Japan, based on differences in colony characteristics, gene x environment responses and multigene phylogeny. Molecular phylogenetic trees and networks revealed the eight Asian lineages were dispersed across the topology of the introduced European and North American lineages. The deepest node within P. ramorum, the divergence of lineages NP1 and NP2, was estimated at 0.5 to 1.6 Myr. The Asian lineages were each of a single mating type, and at some locations, lineages of "opposite" mating type were present, suggesting opportunities for inter-lineage recombination. Based on the high level of phenotypic and phylogenetic diversity in the sample populations, the coalescence results and the absence of overt host symptoms, we conclude that P. ramorum comprises many anciently divergent lineages native to the laurosilva forests between eastern Indochina and Japan.
T2  - Journal of Fungi
T1  - The Destructive Tree Pathogen Phytophthora ramorum Originates from the Laurosilva Forests of East Asia
IS  - 3
VL  - 7
DO  - 10.3390/jof7030226
UR  - conv_1536
ER  - 

@article{
author = "Jung, Thomas and Horta Jung, Marilia and Webber, Joan and Kageyama, Koji and Hieno, Ayaka and Masuya, Hayato and Uematsu, Seiji and Perez-Sierra, Ana and Harris, Anna R. and Forster, Jack and Rees, Helen and Scanu, Bruno and Patra, Sneha and Kudlacek, Tomas and Janousek, Josef and Corcobado, Tamara and Milenković, Ivan and Nagy, Zoltan and Csorba, Ildiko and Bakonyi, Jozsef and Brasier, Clive M.",
year = "2021",
abstract = "As global plant trade expands, tree disease epidemics caused by pathogen introductions are increasing. Since ca 2000, the introduced oomycete Phytophthora ramorum has caused devastating epidemics in Europe and North America, spreading as four ancient clonal lineages, each of a single mating type, suggesting different geographical origins. We surveyed laurosilva forests for P. ramorum around Fansipan mountain on the Vietnam-China border and on Shikoku and Kyushu islands, southwest Japan. The surveys yielded 71 P. ramorum isolates which we assigned to eight new lineages, IC1 to IC5 from Vietnam and NP1 to NP3 from Japan, based on differences in colony characteristics, gene x environment responses and multigene phylogeny. Molecular phylogenetic trees and networks revealed the eight Asian lineages were dispersed across the topology of the introduced European and North American lineages. The deepest node within P. ramorum, the divergence of lineages NP1 and NP2, was estimated at 0.5 to 1.6 Myr. The Asian lineages were each of a single mating type, and at some locations, lineages of "opposite" mating type were present, suggesting opportunities for inter-lineage recombination. Based on the high level of phenotypic and phylogenetic diversity in the sample populations, the coalescence results and the absence of overt host symptoms, we conclude that P. ramorum comprises many anciently divergent lineages native to the laurosilva forests between eastern Indochina and Japan.",
journal = "Journal of Fungi",
title = "The Destructive Tree Pathogen Phytophthora ramorum Originates from the Laurosilva Forests of East Asia",
number = "3",
volume = "7",
doi = "10.3390/jof7030226",
url = "conv_1536"
}

Jung, T., Horta Jung, M., Webber, J., Kageyama, K., Hieno, A., Masuya, H., Uematsu, S., Perez-Sierra, A., Harris, A. R., Forster, J., Rees, H., Scanu, B., Patra, S., Kudlacek, T., Janousek, J., Corcobado, T., Milenković, I., Nagy, Z., Csorba, I., Bakonyi, J.,& Brasier, C. M.. (2021). The Destructive Tree Pathogen Phytophthora ramorum Originates from the Laurosilva Forests of East Asia. in Journal of Fungi, 7(3).
https://doi.org/10.3390/jof7030226
conv_1536

Jung T, Horta Jung M, Webber J, Kageyama K, Hieno A, Masuya H, Uematsu S, Perez-Sierra A, Harris AR, Forster J, Rees H, Scanu B, Patra S, Kudlacek T, Janousek J, Corcobado T, Milenković I, Nagy Z, Csorba I, Bakonyi J, Brasier CM. The Destructive Tree Pathogen Phytophthora ramorum Originates from the Laurosilva Forests of East Asia. in Journal of Fungi. 2021;7(3).
doi:10.3390/jof7030226
conv_1536 .

Jung, Thomas, Horta Jung, Marilia, Webber, Joan, Kageyama, Koji, Hieno, Ayaka, Masuya, Hayato, Uematsu, Seiji, Perez-Sierra, Ana, Harris, Anna R., Forster, Jack, Rees, Helen, Scanu, Bruno, Patra, Sneha, Kudlacek, Tomas, Janousek, Josef, Corcobado, Tamara, Milenković, Ivan, Nagy, Zoltan, Csorba, Ildiko, Bakonyi, Jozsef, Brasier, Clive M., "The Destructive Tree Pathogen Phytophthora ramorum Originates from the Laurosilva Forests of East Asia" in Journal of Fungi, 7, no. 3 (2021),
https://doi.org/10.3390/jof7030226 .,
conv_1536 .

TY  - JOUR
AU  - Vemić, Aleksandar
AU  - Kerkez-Janković, Ivona
AU  - Kudlacek, Tomas
AU  - Jung, Thomas
AU  - Šijačić-Nikolić, Mirjana
AU  - Nonić, Marina
AU  - Milenković, Ivan
PY  - 2021
UR  - https://omorika.sfb.bg.ac.rs/handle/123456789/1232
AB  - For the long-term goal of improving planting success and reforestation of floodplain forests, an underbark inoculation test was performed using one-year-old seedlings from ten different half-sib lines of narrow-leaved ash (Fraxinus angustifolia) to examine the variability of host susceptibility to the ash dieback pathogen Hymenoscyphus fraxineus. Sizes of necrotic lesions, production of epicormic shoots and mortality was recorded in all inoculated seedlings 76 days after inoculation. Mortality of different half-sib lines ranged between 13.3% and 80%. Only one of the tested half-sib lines showed necrotic lesion sizes, production of epicormic sprouts and percentage of mortality substantially lower than all the other nine half-sib-lines of the respective symptom traits. About 20% of half-sib lines had reduced only one of these three symptoms. The other 70% of tested half-sib lines had large necrotic lesions, abundant occurrence of epicormic sprouts and high percentage of mortality. Mortality was also significantly influenced by seedling height at the time of inoculation with taller seedlings developing mortality more slowly than smaller seedlings. This study demonstrates significant differences in the susceptibility to H. fraxineus between different half-sib lines of F. angustifolia and the influence of seedling height on the development of ash dieback.
T2  - Forest Pathology
T1  - Development of Hymenoscyphus fraxineus on seedlings from different half-sib lines of Fraxinus angustifolia in Serbia
IS  - 4
VL  - 51
DO  - 10.1111/efp.12705
UR  - conv_1555
ER  - 

@article{
author = "Vemić, Aleksandar and Kerkez-Janković, Ivona and Kudlacek, Tomas and Jung, Thomas and Šijačić-Nikolić, Mirjana and Nonić, Marina and Milenković, Ivan",
year = "2021",
abstract = "For the long-term goal of improving planting success and reforestation of floodplain forests, an underbark inoculation test was performed using one-year-old seedlings from ten different half-sib lines of narrow-leaved ash (Fraxinus angustifolia) to examine the variability of host susceptibility to the ash dieback pathogen Hymenoscyphus fraxineus. Sizes of necrotic lesions, production of epicormic shoots and mortality was recorded in all inoculated seedlings 76 days after inoculation. Mortality of different half-sib lines ranged between 13.3% and 80%. Only one of the tested half-sib lines showed necrotic lesion sizes, production of epicormic sprouts and percentage of mortality substantially lower than all the other nine half-sib-lines of the respective symptom traits. About 20% of half-sib lines had reduced only one of these three symptoms. The other 70% of tested half-sib lines had large necrotic lesions, abundant occurrence of epicormic sprouts and high percentage of mortality. Mortality was also significantly influenced by seedling height at the time of inoculation with taller seedlings developing mortality more slowly than smaller seedlings. This study demonstrates significant differences in the susceptibility to H. fraxineus between different half-sib lines of F. angustifolia and the influence of seedling height on the development of ash dieback.",
journal = "Forest Pathology",
title = "Development of Hymenoscyphus fraxineus on seedlings from different half-sib lines of Fraxinus angustifolia in Serbia",
number = "4",
volume = "51",
doi = "10.1111/efp.12705",
url = "conv_1555"
}

Vemić, A., Kerkez-Janković, I., Kudlacek, T., Jung, T., Šijačić-Nikolić, M., Nonić, M.,& Milenković, I.. (2021). Development of Hymenoscyphus fraxineus on seedlings from different half-sib lines of Fraxinus angustifolia in Serbia. in Forest Pathology, 51(4).
https://doi.org/10.1111/efp.12705
conv_1555

Vemić A, Kerkez-Janković I, Kudlacek T, Jung T, Šijačić-Nikolić M, Nonić M, Milenković I. Development of Hymenoscyphus fraxineus on seedlings from different half-sib lines of Fraxinus angustifolia in Serbia. in Forest Pathology. 2021;51(4).
doi:10.1111/efp.12705
conv_1555 .

Vemić, Aleksandar, Kerkez-Janković, Ivona, Kudlacek, Tomas, Jung, Thomas, Šijačić-Nikolić, Mirjana, Nonić, Marina, Milenković, Ivan, "Development of Hymenoscyphus fraxineus on seedlings from different half-sib lines of Fraxinus angustifolia in Serbia" in Forest Pathology, 51, no. 4 (2021),
https://doi.org/10.1111/efp.12705 .,
conv_1555 .

TY  - JOUR
AU  - O'Hanlon, Richard
AU  - Destefanis, Maria
AU  - Milenković, Ivan
AU  - Tomsovsky, Michal
AU  - Janousek, Josef
AU  - Bellgard, Stanley E.
AU  - Weir, Bevan S.
AU  - Kudlacek, Tomas
AU  - Horta Jung, Marilia
AU  - Jung, Thomas
PY  - 2021
UR  - https://omorika.sfb.bg.ac.rs/handle/123456789/1184
AB  - Slow growing oomycete isolates with morphological resemblance to Phytophthora were obtained from forest streams during routine monitoring for the EU quarantine forest pathogen Phytophthora ramorum in Ireland and Northern Ireland. Internal Transcribed Spacer (ITS) sequence analysis indicated that they belonged to two previously unknown species of Nothophytophthora, a recently erected sister genus of Phytophthora. Morphological and temperature-growth studies were carried out to characterise both new species. In addition, Bayesian and Maximum-Likelihood analyses of nuclear 5-loci and mitochondrial 3-loci datasets were performed to resolve the phylogenetic positions of the two new species. Both species were sterile, formed chlamydospores and partially caducous nonpapillate sporangia, and showed slower growth than any of the six known Nothophytophthora species. In all phylogenetic analyses both species formed distinct, strongly supported clades, closely related to N. chlamydospora and N. valdiviana from Chile. Based on their unique combination of morphological and physiological characters and their distinct phylogenetic positions the two new species are described as Nothophytophthora irlandica sp. nov. and N. lirii sp. nov. Their potential lifestyle and geographic origin are discussed.
T2  - PLoS One
T1  - Two new Nothophytophthora species from streams in Ireland and Northern Ireland: Nothophytophthora irlandica and N . lirii sp. nov.
IS  - 5
VL  - 16
DO  - 10.1371/journal.pone.0250527
UR  - conv_1557
ER  - 

@article{
author = "O'Hanlon, Richard and Destefanis, Maria and Milenković, Ivan and Tomsovsky, Michal and Janousek, Josef and Bellgard, Stanley E. and Weir, Bevan S. and Kudlacek, Tomas and Horta Jung, Marilia and Jung, Thomas",
year = "2021",
abstract = "Slow growing oomycete isolates with morphological resemblance to Phytophthora were obtained from forest streams during routine monitoring for the EU quarantine forest pathogen Phytophthora ramorum in Ireland and Northern Ireland. Internal Transcribed Spacer (ITS) sequence analysis indicated that they belonged to two previously unknown species of Nothophytophthora, a recently erected sister genus of Phytophthora. Morphological and temperature-growth studies were carried out to characterise both new species. In addition, Bayesian and Maximum-Likelihood analyses of nuclear 5-loci and mitochondrial 3-loci datasets were performed to resolve the phylogenetic positions of the two new species. Both species were sterile, formed chlamydospores and partially caducous nonpapillate sporangia, and showed slower growth than any of the six known Nothophytophthora species. In all phylogenetic analyses both species formed distinct, strongly supported clades, closely related to N. chlamydospora and N. valdiviana from Chile. Based on their unique combination of morphological and physiological characters and their distinct phylogenetic positions the two new species are described as Nothophytophthora irlandica sp. nov. and N. lirii sp. nov. Their potential lifestyle and geographic origin are discussed.",
journal = "PLoS One",
title = "Two new Nothophytophthora species from streams in Ireland and Northern Ireland: Nothophytophthora irlandica and N . lirii sp. nov.",
number = "5",
volume = "16",
doi = "10.1371/journal.pone.0250527",
url = "conv_1557"
}

O'Hanlon, R., Destefanis, M., Milenković, I., Tomsovsky, M., Janousek, J., Bellgard, S. E., Weir, B. S., Kudlacek, T., Horta Jung, M.,& Jung, T.. (2021). Two new Nothophytophthora species from streams in Ireland and Northern Ireland: Nothophytophthora irlandica and N . lirii sp. nov.. in PLoS One, 16(5).
https://doi.org/10.1371/journal.pone.0250527
conv_1557

O'Hanlon R, Destefanis M, Milenković I, Tomsovsky M, Janousek J, Bellgard SE, Weir BS, Kudlacek T, Horta Jung M, Jung T. Two new Nothophytophthora species from streams in Ireland and Northern Ireland: Nothophytophthora irlandica and N . lirii sp. nov.. in PLoS One. 2021;16(5).
doi:10.1371/journal.pone.0250527
conv_1557 .

O'Hanlon, Richard, Destefanis, Maria, Milenković, Ivan, Tomsovsky, Michal, Janousek, Josef, Bellgard, Stanley E., Weir, Bevan S., Kudlacek, Tomas, Horta Jung, Marilia, Jung, Thomas, "Two new Nothophytophthora species from streams in Ireland and Northern Ireland: Nothophytophthora irlandica and N . lirii sp. nov." in PLoS One, 16, no. 5 (2021),
https://doi.org/10.1371/journal.pone.0250527 .,
conv_1557 .