TY  - JOUR
AU  - Jung, T.
AU  - Milenković, Ivan
AU  - Balci, Y.
AU  - Janousek, J.
AU  - Kudlacek, Tomas
AU  - Nagy, Zoltan
AU  - Baharuddin, B.
AU  - Bakonyi, J.
AU  - Broders, Kirk D.
AU  - Cacciola, S. O.
AU  - Chang, T. -T.
AU  - Chi, N. M.
AU  - Corcobado, Tamara
AU  - Cravador, A.
AU  - Đorđević, B.
AU  - Duran, A.
AU  - Ferreira, M.
AU  - Fu, C. -H.
AU  - Garcia, L.
AU  - Hieno, A.
AU  - Ho, H. -H.
AU  - Hong, C.
AU  - Junaid, M.
AU  - Kageyama, K.
AU  - Kuswinanti, T.
AU  - Maia, C.
AU  - Majek, Tomas
AU  - Masuya, H.
AU  - Lio, G. Magnano di San
AU  - Mendieta-Araica, B.
AU  - Nasri, N.
AU  - Oliveira, L. S. S.
AU  - Pane, A.
AU  - Perez-Sierra, Ana
AU  - Rosmana, A.
AU  - von Stowasser, E. Sanfuentes
AU  - Scanu, Bruno
AU  - Singh, R.
AU  - Stanivuković, Zoran
AU  - Tarigan, Marthin
AU  - Thu, P. Q.
AU  - Tomić, Z.
AU  - Tomsovsky, M.
AU  - Uematsu, Seiji
AU  - Webber, Joan
AU  - Zeng, H. -C.
AU  - Zheng, F. -C.
AU  - Brasier, Clive M.
AU  - Horta Jung, Marilia
PY  - 2024
UR  - https://omorika.sfb.bg.ac.rs/handle/123456789/1492
AB  - During 25 surveys of global Phytophthora diversity, conducted between 1998 and 2020, 43 new species were detected in natural ecosystems and, occasionally, in nurseries and outplantings in Europe, Southeast and East Asia and the Americas. Based on a multigene phylogeny of nine nuclear and four mitochondrial gene regions they were assigned to five of the six known subclades, 2a-c, e and f, of Phytophthora major Clade 2 and the new subclade 2g. The evolutionary history of the Clade appears to have involved the pre-Gondwanan divergence of three extant subclades, 2c, 2e and 2f, all having disjunct natural distributions on separate continents and comprising species with a soilborne and aquatic lifestyle and, in addition, a few partially aerial species in Clade 2c; and the post-Gondwanan evolution of subclades 2a and 2g in Southeast/East Asia and 2b in South America, respectively, from their common ancestor. Species in Clade 2g are soilborne whereas Clade 2b comprises both soil-inhabiting and aerial species. Clade 2a has evolved further towards an aerial lifestyle comprising only species which are predominantly or partially airborne. Based on high nuclear heterozygosity levels ca. 38 % of the taxa in Clades 2a and 2b could be some form of hybrid, and the hybridity may be favoured by an A1/A2 breeding system and an aerial life style. Circumstantial evidence suggests the now 93 described species and informally designated taxa in Clade 2 result from both allopatric non-adaptive and sympatric adaptive radiations. They represent most morphological and physiological characters, breeding systems, lifestyles and forms of host specialism found across the Phytophthora clades as a whole, demonstrating the strong biological cohesiveness of the genus. The finding of 43 previously unknown species from a single Phytophthora clade highlight a critical lack of information on the scale of the unknown pathogen threats to forests and natural ecosystems, underlining the risk of basing plant biosecurity protocols mainly on lists of named organisms. More surveys in natural ecosystems of yet unsurveyed regions in Africa, Asia, Central and South America are needed to unveil the full diversity of the clade and the factors driving diversity, speciation and adaptation in Phytophthora.
T2  - Studies in Mycology
T1  - Worldwide forest surveys reveal forty-three new species in Phytophthora major Clade 2 with fundamental implications for the evolution and biogeography of the genus and global plant biosecurity
EP  - 388
IS  - 107
SP  - 251
DO  - 10.3114/sim.2024.107.04
UR  - conv_1770
ER  - 

@article{
author = "Jung, T. and Milenković, Ivan and Balci, Y. and Janousek, J. and Kudlacek, Tomas and Nagy, Zoltan and Baharuddin, B. and Bakonyi, J. and Broders, Kirk D. and Cacciola, S. O. and Chang, T. -T. and Chi, N. M. and Corcobado, Tamara and Cravador, A. and Đorđević, B. and Duran, A. and Ferreira, M. and Fu, C. -H. and Garcia, L. and Hieno, A. and Ho, H. -H. and Hong, C. and Junaid, M. and Kageyama, K. and Kuswinanti, T. and Maia, C. and Majek, Tomas and Masuya, H. and Lio, G. Magnano di San and Mendieta-Araica, B. and Nasri, N. and Oliveira, L. S. S. and Pane, A. and Perez-Sierra, Ana and Rosmana, A. and von Stowasser, E. Sanfuentes and Scanu, Bruno and Singh, R. and Stanivuković, Zoran and Tarigan, Marthin and Thu, P. Q. and Tomić, Z. and Tomsovsky, M. and Uematsu, Seiji and Webber, Joan and Zeng, H. -C. and Zheng, F. -C. and Brasier, Clive M. and Horta Jung, Marilia",
year = "2024",
abstract = "During 25 surveys of global Phytophthora diversity, conducted between 1998 and 2020, 43 new species were detected in natural ecosystems and, occasionally, in nurseries and outplantings in Europe, Southeast and East Asia and the Americas. Based on a multigene phylogeny of nine nuclear and four mitochondrial gene regions they were assigned to five of the six known subclades, 2a-c, e and f, of Phytophthora major Clade 2 and the new subclade 2g. The evolutionary history of the Clade appears to have involved the pre-Gondwanan divergence of three extant subclades, 2c, 2e and 2f, all having disjunct natural distributions on separate continents and comprising species with a soilborne and aquatic lifestyle and, in addition, a few partially aerial species in Clade 2c; and the post-Gondwanan evolution of subclades 2a and 2g in Southeast/East Asia and 2b in South America, respectively, from their common ancestor. Species in Clade 2g are soilborne whereas Clade 2b comprises both soil-inhabiting and aerial species. Clade 2a has evolved further towards an aerial lifestyle comprising only species which are predominantly or partially airborne. Based on high nuclear heterozygosity levels ca. 38 % of the taxa in Clades 2a and 2b could be some form of hybrid, and the hybridity may be favoured by an A1/A2 breeding system and an aerial life style. Circumstantial evidence suggests the now 93 described species and informally designated taxa in Clade 2 result from both allopatric non-adaptive and sympatric adaptive radiations. They represent most morphological and physiological characters, breeding systems, lifestyles and forms of host specialism found across the Phytophthora clades as a whole, demonstrating the strong biological cohesiveness of the genus. The finding of 43 previously unknown species from a single Phytophthora clade highlight a critical lack of information on the scale of the unknown pathogen threats to forests and natural ecosystems, underlining the risk of basing plant biosecurity protocols mainly on lists of named organisms. More surveys in natural ecosystems of yet unsurveyed regions in Africa, Asia, Central and South America are needed to unveil the full diversity of the clade and the factors driving diversity, speciation and adaptation in Phytophthora.",
journal = "Studies in Mycology",
title = "Worldwide forest surveys reveal forty-three new species in Phytophthora major Clade 2 with fundamental implications for the evolution and biogeography of the genus and global plant biosecurity",
pages = "388-251",
number = "107",
doi = "10.3114/sim.2024.107.04",
url = "conv_1770"
}

Jung, T., Milenković, I., Balci, Y., Janousek, J., Kudlacek, T., Nagy, Z., Baharuddin, B., Bakonyi, J., Broders, K. D., Cacciola, S. O., Chang, T. -T., Chi, N. M., Corcobado, T., Cravador, A., Đorđević, B., Duran, A., Ferreira, M., Fu, C. -H., Garcia, L., Hieno, A., Ho, H. -H., Hong, C., Junaid, M., Kageyama, K., Kuswinanti, T., Maia, C., Majek, T., Masuya, H., Lio, G. M. d. S., Mendieta-Araica, B., Nasri, N., Oliveira, L. S. S., Pane, A., Perez-Sierra, A., Rosmana, A., von Stowasser, E. S., Scanu, B., Singh, R., Stanivuković, Z., Tarigan, M., Thu, P. Q., Tomić, Z., Tomsovsky, M., Uematsu, S., Webber, J., Zeng, H. -C., Zheng, F. -C., Brasier, C. M.,& Horta Jung, M.. (2024). Worldwide forest surveys reveal forty-three new species in Phytophthora major Clade 2 with fundamental implications for the evolution and biogeography of the genus and global plant biosecurity. in Studies in Mycology(107), 251-388.
https://doi.org/10.3114/sim.2024.107.04
conv_1770

Jung T, Milenković I, Balci Y, Janousek J, Kudlacek T, Nagy Z, Baharuddin B, Bakonyi J, Broders KD, Cacciola SO, Chang T-, Chi NM, Corcobado T, Cravador A, Đorđević B, Duran A, Ferreira M, Fu C-, Garcia L, Hieno A, Ho H-, Hong C, Junaid M, Kageyama K, Kuswinanti T, Maia C, Majek T, Masuya H, Lio GMDS, Mendieta-Araica B, Nasri N, Oliveira LSS, Pane A, Perez-Sierra A, Rosmana A, von Stowasser ES, Scanu B, Singh R, Stanivuković Z, Tarigan M, Thu PQ, Tomić Z, Tomsovsky M, Uematsu S, Webber J, Zeng H-, Zheng F-, Brasier CM, Horta Jung M. Worldwide forest surveys reveal forty-three new species in Phytophthora major Clade 2 with fundamental implications for the evolution and biogeography of the genus and global plant biosecurity. in Studies in Mycology. 2024;(107):251-388.
doi:10.3114/sim.2024.107.04
conv_1770 .

Jung, T., Milenković, Ivan, Balci, Y., Janousek, J., Kudlacek, Tomas, Nagy, Zoltan, Baharuddin, B., Bakonyi, J., Broders, Kirk D., Cacciola, S. O., Chang, T. -T., Chi, N. M., Corcobado, Tamara, Cravador, A., Đorđević, B., Duran, A., Ferreira, M., Fu, C. -H., Garcia, L., Hieno, A., Ho, H. -H., Hong, C., Junaid, M., Kageyama, K., Kuswinanti, T., Maia, C., Majek, Tomas, Masuya, H., Lio, G. Magnano di San, Mendieta-Araica, B., Nasri, N., Oliveira, L. S. S., Pane, A., Perez-Sierra, Ana, Rosmana, A., von Stowasser, E. Sanfuentes, Scanu, Bruno, Singh, R., Stanivuković, Zoran, Tarigan, Marthin, Thu, P. Q., Tomić, Z., Tomsovsky, M., Uematsu, Seiji, Webber, Joan, Zeng, H. -C., Zheng, F. -C., Brasier, Clive M., Horta Jung, Marilia, "Worldwide forest surveys reveal forty-three new species in Phytophthora major Clade 2 with fundamental implications for the evolution and biogeography of the genus and global plant biosecurity" in Studies in Mycology, no. 107 (2024):251-388,
https://doi.org/10.3114/sim.2024.107.04 .,
conv_1770 .

TY  - JOUR
AU  - Jung, Thomas
AU  - Balci, Yilmaz
AU  - Broders, Kirk D.
AU  - Milenković, Ivan
AU  - Janousek, Josef
AU  - Kudlacek, Tomas
AU  - Đorđević, Biljana
AU  - Horta Jung, Marilia
PY  - 2023
UR  - https://omorika.sfb.bg.ac.rs/handle/123456789/1383
AB  - During a survey of Phytophthora diversity in Panama, fast-growing oomycete isolates were obtained from naturally fallen leaves of an unidentified tree species in a tropical cloud forest. Phylogenetic analyses of sequences from the nuclear ITS, LSU and beta tub loci and the mitochondrial cox1 and cox2 genes revealed that they belong to a new species of a new genus, officially described here as Synchrospora gen. nov., which resided as a basal genus within the Peronosporaceae. The type species S. medusiformis has unique morphological characteristics. The sporangiophores show determinate growth, multifurcating at the end, forming a stunted, candelabra-like apex from which multiple (8 to  gt 100) long, curved pedicels are growing simultaneously in a medusa-like way. The caducous papillate sporangia mature and are shed synchronously. The breeding system is homothallic, hence more inbreeding than outcrossing, with smooth-walled oogonia, plerotic oospores and paragynous antheridia. Optimum and maximum temperatures for growth are 22.5 and 25-27.5 degrees C, consistent with its natural cloud forest habitat. It is concluded that S. medusiformis as adapted to a lifestyle as a canopy-dwelling leaf pathogen in tropical cloud forests. More oomycete explorations in the canopies of tropical rainforests and cloud forests are needed to elucidate the diversity, host associations and ecological roles of oomycetes and, in particular, S. medusiformis and possibly other Synchrospora taxa in this as yet under-explored habitat.
T2  - Journal of Fungi
T1  - Synchrospora gen. nov., a New Peronosporaceae Genus with Aerial Lifestyle from a Natural Cloud Forest in Panama
IS  - 5
VL  - 9
DO  - 10.3390/jof9050517
UR  - conv_1713
ER  - 

@article{
author = "Jung, Thomas and Balci, Yilmaz and Broders, Kirk D. and Milenković, Ivan and Janousek, Josef and Kudlacek, Tomas and Đorđević, Biljana and Horta Jung, Marilia",
year = "2023",
abstract = "During a survey of Phytophthora diversity in Panama, fast-growing oomycete isolates were obtained from naturally fallen leaves of an unidentified tree species in a tropical cloud forest. Phylogenetic analyses of sequences from the nuclear ITS, LSU and beta tub loci and the mitochondrial cox1 and cox2 genes revealed that they belong to a new species of a new genus, officially described here as Synchrospora gen. nov., which resided as a basal genus within the Peronosporaceae. The type species S. medusiformis has unique morphological characteristics. The sporangiophores show determinate growth, multifurcating at the end, forming a stunted, candelabra-like apex from which multiple (8 to  gt 100) long, curved pedicels are growing simultaneously in a medusa-like way. The caducous papillate sporangia mature and are shed synchronously. The breeding system is homothallic, hence more inbreeding than outcrossing, with smooth-walled oogonia, plerotic oospores and paragynous antheridia. Optimum and maximum temperatures for growth are 22.5 and 25-27.5 degrees C, consistent with its natural cloud forest habitat. It is concluded that S. medusiformis as adapted to a lifestyle as a canopy-dwelling leaf pathogen in tropical cloud forests. More oomycete explorations in the canopies of tropical rainforests and cloud forests are needed to elucidate the diversity, host associations and ecological roles of oomycetes and, in particular, S. medusiformis and possibly other Synchrospora taxa in this as yet under-explored habitat.",
journal = "Journal of Fungi",
title = "Synchrospora gen. nov., a New Peronosporaceae Genus with Aerial Lifestyle from a Natural Cloud Forest in Panama",
number = "5",
volume = "9",
doi = "10.3390/jof9050517",
url = "conv_1713"
}

Jung, T., Balci, Y., Broders, K. D., Milenković, I., Janousek, J., Kudlacek, T., Đorđević, B.,& Horta Jung, M.. (2023). Synchrospora gen. nov., a New Peronosporaceae Genus with Aerial Lifestyle from a Natural Cloud Forest in Panama. in Journal of Fungi, 9(5).
https://doi.org/10.3390/jof9050517
conv_1713

Jung T, Balci Y, Broders KD, Milenković I, Janousek J, Kudlacek T, Đorđević B, Horta Jung M. Synchrospora gen. nov., a New Peronosporaceae Genus with Aerial Lifestyle from a Natural Cloud Forest in Panama. in Journal of Fungi. 2023;9(5).
doi:10.3390/jof9050517
conv_1713 .

Jung, Thomas, Balci, Yilmaz, Broders, Kirk D., Milenković, Ivan, Janousek, Josef, Kudlacek, Tomas, Đorđević, Biljana, Horta Jung, Marilia, "Synchrospora gen. nov., a New Peronosporaceae Genus with Aerial Lifestyle from a Natural Cloud Forest in Panama" in Journal of Fungi, 9, no. 5 (2023),
https://doi.org/10.3390/jof9050517 .,
conv_1713 .

TY  - JOUR
AU  - Chen, Q.
AU  - Bakhshi, M.
AU  - Balci, Y.
AU  - Broders, Kirk D.
AU  - Cheewangkoon, R.
AU  - Chen, S. F.
AU  - Fan, X. L.
AU  - Gramaje, D.
AU  - Halleen, F.
AU  - Horta Jung, Marilia
AU  - Jiang, N.
AU  - Jung, T.
AU  - Majek, Tomas
AU  - Marincowitz, S.
AU  - Milenković, Ivan
AU  - Mostert, L.
AU  - Nakashima, C.
AU  - Faziha, I. Nurul
AU  - Pan, M.
AU  - Raza, M.
AU  - Scanu, Bruno
AU  - Spies, C. F. J.
AU  - Suhaizan, L.
AU  - Suzuki, H.
AU  - Tian, C. M.
AU  - Tomsovsky, M.
AU  - Torres, J. R. Urbez
AU  - Wang, W.
AU  - Wingfield, B. D.
AU  - Wingfield, Michael J.
AU  - Yang, Q.
AU  - Yang, X.
AU  - Zare, R.
AU  - Zhao, P.
AU  - Groenewald, J. Z.
AU  - Cai, L.
AU  - Crous, P. W.
PY  - 2022
UR  - https://omorika.sfb.bg.ac.rs/handle/123456789/1308
AB  - This paper is the fourth contribution in the Genera of Phytopathogenic Fungi (GOPHY) series. The series provides morphological descriptions and information about the pathology, distribution, hosts and disease symptoms, as well as DNA barcodes for the taxa covered. Moreover, 12 whole-genome sequences for the type or new species in the treated genera are provided. The fourth paper in the GOPHY series covers 19 genera of phytopathogenic fungi and their relatives, including Ascochyta, Cadophora, Celoporthe, Cercospora, Coleophoma, Cytospora, Dendrostoma, Didymella, Endothia, Heterophae-omoniella, Leptosphaerulina, Melampsora, Nigrospora, Pezicula, Phaeomoniella, Pseudocercospora, Pteridopassalora, Zymoseptoria, and one genus of oomycetes, Phytophthora. This study includes two new genera, 30 new species, five new combinations, and 43 typifications of older names.
T2  - Studies in Mycology
T1  - Genera of phytopathogenic fungi: GOPHY 4
EP  - 564
IS  - 101
SP  - 417
DO  - 10.3114/sim.2022.101.06
UR  - conv_1644
ER  - 

@article{
author = "Chen, Q. and Bakhshi, M. and Balci, Y. and Broders, Kirk D. and Cheewangkoon, R. and Chen, S. F. and Fan, X. L. and Gramaje, D. and Halleen, F. and Horta Jung, Marilia and Jiang, N. and Jung, T. and Majek, Tomas and Marincowitz, S. and Milenković, Ivan and Mostert, L. and Nakashima, C. and Faziha, I. Nurul and Pan, M. and Raza, M. and Scanu, Bruno and Spies, C. F. J. and Suhaizan, L. and Suzuki, H. and Tian, C. M. and Tomsovsky, M. and Torres, J. R. Urbez and Wang, W. and Wingfield, B. D. and Wingfield, Michael J. and Yang, Q. and Yang, X. and Zare, R. and Zhao, P. and Groenewald, J. Z. and Cai, L. and Crous, P. W.",
year = "2022",
abstract = "This paper is the fourth contribution in the Genera of Phytopathogenic Fungi (GOPHY) series. The series provides morphological descriptions and information about the pathology, distribution, hosts and disease symptoms, as well as DNA barcodes for the taxa covered. Moreover, 12 whole-genome sequences for the type or new species in the treated genera are provided. The fourth paper in the GOPHY series covers 19 genera of phytopathogenic fungi and their relatives, including Ascochyta, Cadophora, Celoporthe, Cercospora, Coleophoma, Cytospora, Dendrostoma, Didymella, Endothia, Heterophae-omoniella, Leptosphaerulina, Melampsora, Nigrospora, Pezicula, Phaeomoniella, Pseudocercospora, Pteridopassalora, Zymoseptoria, and one genus of oomycetes, Phytophthora. This study includes two new genera, 30 new species, five new combinations, and 43 typifications of older names.",
journal = "Studies in Mycology",
title = "Genera of phytopathogenic fungi: GOPHY 4",
pages = "564-417",
number = "101",
doi = "10.3114/sim.2022.101.06",
url = "conv_1644"
}

Chen, Q., Bakhshi, M., Balci, Y., Broders, K. D., Cheewangkoon, R., Chen, S. F., Fan, X. L., Gramaje, D., Halleen, F., Horta Jung, M., Jiang, N., Jung, T., Majek, T., Marincowitz, S., Milenković, I., Mostert, L., Nakashima, C., Faziha, I. N., Pan, M., Raza, M., Scanu, B., Spies, C. F. J., Suhaizan, L., Suzuki, H., Tian, C. M., Tomsovsky, M., Torres, J. R. U., Wang, W., Wingfield, B. D., Wingfield, M. J., Yang, Q., Yang, X., Zare, R., Zhao, P., Groenewald, J. Z., Cai, L.,& Crous, P. W.. (2022). Genera of phytopathogenic fungi: GOPHY 4. in Studies in Mycology(101), 417-564.
https://doi.org/10.3114/sim.2022.101.06
conv_1644

Chen Q, Bakhshi M, Balci Y, Broders KD, Cheewangkoon R, Chen SF, Fan XL, Gramaje D, Halleen F, Horta Jung M, Jiang N, Jung T, Majek T, Marincowitz S, Milenković I, Mostert L, Nakashima C, Faziha IN, Pan M, Raza M, Scanu B, Spies CFJ, Suhaizan L, Suzuki H, Tian CM, Tomsovsky M, Torres JRU, Wang W, Wingfield BD, Wingfield MJ, Yang Q, Yang X, Zare R, Zhao P, Groenewald JZ, Cai L, Crous PW. Genera of phytopathogenic fungi: GOPHY 4. in Studies in Mycology. 2022;(101):417-564.
doi:10.3114/sim.2022.101.06
conv_1644 .

Chen, Q., Bakhshi, M., Balci, Y., Broders, Kirk D., Cheewangkoon, R., Chen, S. F., Fan, X. L., Gramaje, D., Halleen, F., Horta Jung, Marilia, Jiang, N., Jung, T., Majek, Tomas, Marincowitz, S., Milenković, Ivan, Mostert, L., Nakashima, C., Faziha, I. Nurul, Pan, M., Raza, M., Scanu, Bruno, Spies, C. F. J., Suhaizan, L., Suzuki, H., Tian, C. M., Tomsovsky, M., Torres, J. R. Urbez, Wang, W., Wingfield, B. D., Wingfield, Michael J., Yang, Q., Yang, X., Zare, R., Zhao, P., Groenewald, J. Z., Cai, L., Crous, P. W., "Genera of phytopathogenic fungi: GOPHY 4" in Studies in Mycology, no. 101 (2022):417-564,
https://doi.org/10.3114/sim.2022.101.06 .,
conv_1644 .