TY  - JOUR
AU  - Jung, T.
AU  - Milenković, Ivan
AU  - Balci, Y.
AU  - Janousek, J.
AU  - Kudlacek, Tomas
AU  - Nagy, Zoltan
AU  - Baharuddin, B.
AU  - Bakonyi, J.
AU  - Broders, Kirk D.
AU  - Cacciola, S. O.
AU  - Chang, T. -T.
AU  - Chi, N. M.
AU  - Corcobado, Tamara
AU  - Cravador, A.
AU  - Đorđević, B.
AU  - Duran, A.
AU  - Ferreira, M.
AU  - Fu, C. -H.
AU  - Garcia, L.
AU  - Hieno, A.
AU  - Ho, H. -H.
AU  - Hong, C.
AU  - Junaid, M.
AU  - Kageyama, K.
AU  - Kuswinanti, T.
AU  - Maia, C.
AU  - Majek, Tomas
AU  - Masuya, H.
AU  - Lio, G. Magnano di San
AU  - Mendieta-Araica, B.
AU  - Nasri, N.
AU  - Oliveira, L. S. S.
AU  - Pane, A.
AU  - Perez-Sierra, Ana
AU  - Rosmana, A.
AU  - von Stowasser, E. Sanfuentes
AU  - Scanu, Bruno
AU  - Singh, R.
AU  - Stanivuković, Zoran
AU  - Tarigan, Marthin
AU  - Thu, P. Q.
AU  - Tomić, Z.
AU  - Tomsovsky, M.
AU  - Uematsu, Seiji
AU  - Webber, Joan
AU  - Zeng, H. -C.
AU  - Zheng, F. -C.
AU  - Brasier, Clive M.
AU  - Horta Jung, Marilia
PY  - 2024
UR  - https://omorika.sfb.bg.ac.rs/handle/123456789/1492
AB  - During 25 surveys of global Phytophthora diversity, conducted between 1998 and 2020, 43 new species were detected in natural ecosystems and, occasionally, in nurseries and outplantings in Europe, Southeast and East Asia and the Americas. Based on a multigene phylogeny of nine nuclear and four mitochondrial gene regions they were assigned to five of the six known subclades, 2a-c, e and f, of Phytophthora major Clade 2 and the new subclade 2g. The evolutionary history of the Clade appears to have involved the pre-Gondwanan divergence of three extant subclades, 2c, 2e and 2f, all having disjunct natural distributions on separate continents and comprising species with a soilborne and aquatic lifestyle and, in addition, a few partially aerial species in Clade 2c; and the post-Gondwanan evolution of subclades 2a and 2g in Southeast/East Asia and 2b in South America, respectively, from their common ancestor. Species in Clade 2g are soilborne whereas Clade 2b comprises both soil-inhabiting and aerial species. Clade 2a has evolved further towards an aerial lifestyle comprising only species which are predominantly or partially airborne. Based on high nuclear heterozygosity levels ca. 38 % of the taxa in Clades 2a and 2b could be some form of hybrid, and the hybridity may be favoured by an A1/A2 breeding system and an aerial life style. Circumstantial evidence suggests the now 93 described species and informally designated taxa in Clade 2 result from both allopatric non-adaptive and sympatric adaptive radiations. They represent most morphological and physiological characters, breeding systems, lifestyles and forms of host specialism found across the Phytophthora clades as a whole, demonstrating the strong biological cohesiveness of the genus. The finding of 43 previously unknown species from a single Phytophthora clade highlight a critical lack of information on the scale of the unknown pathogen threats to forests and natural ecosystems, underlining the risk of basing plant biosecurity protocols mainly on lists of named organisms. More surveys in natural ecosystems of yet unsurveyed regions in Africa, Asia, Central and South America are needed to unveil the full diversity of the clade and the factors driving diversity, speciation and adaptation in Phytophthora.
T2  - Studies in Mycology
T1  - Worldwide forest surveys reveal forty-three new species in Phytophthora major Clade 2 with fundamental implications for the evolution and biogeography of the genus and global plant biosecurity
EP  - 388
IS  - 107
SP  - 251
DO  - 10.3114/sim.2024.107.04
UR  - conv_1770
ER  - 

@article{
author = "Jung, T. and Milenković, Ivan and Balci, Y. and Janousek, J. and Kudlacek, Tomas and Nagy, Zoltan and Baharuddin, B. and Bakonyi, J. and Broders, Kirk D. and Cacciola, S. O. and Chang, T. -T. and Chi, N. M. and Corcobado, Tamara and Cravador, A. and Đorđević, B. and Duran, A. and Ferreira, M. and Fu, C. -H. and Garcia, L. and Hieno, A. and Ho, H. -H. and Hong, C. and Junaid, M. and Kageyama, K. and Kuswinanti, T. and Maia, C. and Majek, Tomas and Masuya, H. and Lio, G. Magnano di San and Mendieta-Araica, B. and Nasri, N. and Oliveira, L. S. S. and Pane, A. and Perez-Sierra, Ana and Rosmana, A. and von Stowasser, E. Sanfuentes and Scanu, Bruno and Singh, R. and Stanivuković, Zoran and Tarigan, Marthin and Thu, P. Q. and Tomić, Z. and Tomsovsky, M. and Uematsu, Seiji and Webber, Joan and Zeng, H. -C. and Zheng, F. -C. and Brasier, Clive M. and Horta Jung, Marilia",
year = "2024",
abstract = "During 25 surveys of global Phytophthora diversity, conducted between 1998 and 2020, 43 new species were detected in natural ecosystems and, occasionally, in nurseries and outplantings in Europe, Southeast and East Asia and the Americas. Based on a multigene phylogeny of nine nuclear and four mitochondrial gene regions they were assigned to five of the six known subclades, 2a-c, e and f, of Phytophthora major Clade 2 and the new subclade 2g. The evolutionary history of the Clade appears to have involved the pre-Gondwanan divergence of three extant subclades, 2c, 2e and 2f, all having disjunct natural distributions on separate continents and comprising species with a soilborne and aquatic lifestyle and, in addition, a few partially aerial species in Clade 2c; and the post-Gondwanan evolution of subclades 2a and 2g in Southeast/East Asia and 2b in South America, respectively, from their common ancestor. Species in Clade 2g are soilborne whereas Clade 2b comprises both soil-inhabiting and aerial species. Clade 2a has evolved further towards an aerial lifestyle comprising only species which are predominantly or partially airborne. Based on high nuclear heterozygosity levels ca. 38 % of the taxa in Clades 2a and 2b could be some form of hybrid, and the hybridity may be favoured by an A1/A2 breeding system and an aerial life style. Circumstantial evidence suggests the now 93 described species and informally designated taxa in Clade 2 result from both allopatric non-adaptive and sympatric adaptive radiations. They represent most morphological and physiological characters, breeding systems, lifestyles and forms of host specialism found across the Phytophthora clades as a whole, demonstrating the strong biological cohesiveness of the genus. The finding of 43 previously unknown species from a single Phytophthora clade highlight a critical lack of information on the scale of the unknown pathogen threats to forests and natural ecosystems, underlining the risk of basing plant biosecurity protocols mainly on lists of named organisms. More surveys in natural ecosystems of yet unsurveyed regions in Africa, Asia, Central and South America are needed to unveil the full diversity of the clade and the factors driving diversity, speciation and adaptation in Phytophthora.",
journal = "Studies in Mycology",
title = "Worldwide forest surveys reveal forty-three new species in Phytophthora major Clade 2 with fundamental implications for the evolution and biogeography of the genus and global plant biosecurity",
pages = "388-251",
number = "107",
doi = "10.3114/sim.2024.107.04",
url = "conv_1770"
}

Jung, T., Milenković, I., Balci, Y., Janousek, J., Kudlacek, T., Nagy, Z., Baharuddin, B., Bakonyi, J., Broders, K. D., Cacciola, S. O., Chang, T. -T., Chi, N. M., Corcobado, T., Cravador, A., Đorđević, B., Duran, A., Ferreira, M., Fu, C. -H., Garcia, L., Hieno, A., Ho, H. -H., Hong, C., Junaid, M., Kageyama, K., Kuswinanti, T., Maia, C., Majek, T., Masuya, H., Lio, G. M. d. S., Mendieta-Araica, B., Nasri, N., Oliveira, L. S. S., Pane, A., Perez-Sierra, A., Rosmana, A., von Stowasser, E. S., Scanu, B., Singh, R., Stanivuković, Z., Tarigan, M., Thu, P. Q., Tomić, Z., Tomsovsky, M., Uematsu, S., Webber, J., Zeng, H. -C., Zheng, F. -C., Brasier, C. M.,& Horta Jung, M.. (2024). Worldwide forest surveys reveal forty-three new species in Phytophthora major Clade 2 with fundamental implications for the evolution and biogeography of the genus and global plant biosecurity. in Studies in Mycology(107), 251-388.
https://doi.org/10.3114/sim.2024.107.04
conv_1770

Jung T, Milenković I, Balci Y, Janousek J, Kudlacek T, Nagy Z, Baharuddin B, Bakonyi J, Broders KD, Cacciola SO, Chang T-, Chi NM, Corcobado T, Cravador A, Đorđević B, Duran A, Ferreira M, Fu C-, Garcia L, Hieno A, Ho H-, Hong C, Junaid M, Kageyama K, Kuswinanti T, Maia C, Majek T, Masuya H, Lio GMDS, Mendieta-Araica B, Nasri N, Oliveira LSS, Pane A, Perez-Sierra A, Rosmana A, von Stowasser ES, Scanu B, Singh R, Stanivuković Z, Tarigan M, Thu PQ, Tomić Z, Tomsovsky M, Uematsu S, Webber J, Zeng H-, Zheng F-, Brasier CM, Horta Jung M. Worldwide forest surveys reveal forty-three new species in Phytophthora major Clade 2 with fundamental implications for the evolution and biogeography of the genus and global plant biosecurity. in Studies in Mycology. 2024;(107):251-388.
doi:10.3114/sim.2024.107.04
conv_1770 .

Jung, T., Milenković, Ivan, Balci, Y., Janousek, J., Kudlacek, Tomas, Nagy, Zoltan, Baharuddin, B., Bakonyi, J., Broders, Kirk D., Cacciola, S. O., Chang, T. -T., Chi, N. M., Corcobado, Tamara, Cravador, A., Đorđević, B., Duran, A., Ferreira, M., Fu, C. -H., Garcia, L., Hieno, A., Ho, H. -H., Hong, C., Junaid, M., Kageyama, K., Kuswinanti, T., Maia, C., Majek, Tomas, Masuya, H., Lio, G. Magnano di San, Mendieta-Araica, B., Nasri, N., Oliveira, L. S. S., Pane, A., Perez-Sierra, Ana, Rosmana, A., von Stowasser, E. Sanfuentes, Scanu, Bruno, Singh, R., Stanivuković, Zoran, Tarigan, Marthin, Thu, P. Q., Tomić, Z., Tomsovsky, M., Uematsu, Seiji, Webber, Joan, Zeng, H. -C., Zheng, F. -C., Brasier, Clive M., Horta Jung, Marilia, "Worldwide forest surveys reveal forty-three new species in Phytophthora major Clade 2 with fundamental implications for the evolution and biogeography of the genus and global plant biosecurity" in Studies in Mycology, no. 107 (2024):251-388,
https://doi.org/10.3114/sim.2024.107.04 .,
conv_1770 .

TY  - JOUR
AU  - Jung, T.
AU  - Orlikowski, L.
AU  - Henricot, B.
AU  - Abad-Campos, P.
AU  - Aday, A. G.
AU  - Aguin Casal, O.
AU  - Bakonyi, J.
AU  - Cacciola, S. O.
AU  - Cech, T.
AU  - Chavarriaga, D.
AU  - Corcobado, Tamara
AU  - Cravador, A.
AU  - Decourcelle, T.
AU  - Denton, G.
AU  - Diamandis, S.
AU  - Dogmus-Lehtijaervi, H. T.
AU  - Franceschini, A.
AU  - Ginetti, B.
AU  - Green, Samantha
AU  - Glavendekić, Milka
AU  - Hantula, J.
AU  - Hartmann, G.
AU  - Herrero, M.
AU  - Ivić, D.
AU  - Horta Jung, M.
AU  - Lilja, A.
AU  - Keča, Nenad
AU  - Kramarets, V.
AU  - Lyubenova, A.
AU  - Machado, H.
AU  - Magnano di San Lio, G.
AU  - Mansilla Vazquez, P. J.
AU  - Marcais, B.
AU  - Matsiakh, I.
AU  - Milenković, Ivan
AU  - Moricca, S.
AU  - Nagy, Zoltan
AU  - Nechwatal, J.
AU  - Olsson, C.
AU  - Oszako, Tomasz
AU  - Pane, A.
AU  - Paplomatas, E. J.
AU  - Pintos Varela, C.
AU  - Prospero, Simone
AU  - Rial Martinez, C.
AU  - Rigling, D.
AU  - Robin, Cecile
AU  - Rytkoenen, A.
AU  - Sanchez, M. E.
AU  - Sanz Ros, A. V.
AU  - Scanu, Bruno
AU  - Schlenzig, A.
AU  - Schumacher, J.
AU  - Slavov, S.
AU  - Solla, Alejandro
AU  - Sousa, E.
AU  - Stenlid, J.
AU  - Talgo, Venche
AU  - Tomić, Z.
AU  - Tsopelas, Panaghiotis
AU  - Vannini, A.
AU  - Vettraino, Anna Maria
AU  - Wenneker, M.
AU  - Woodward, S.
AU  - Perez-Sierra, Ana
PY  - 2016
UR  - https://omorika.sfb.bg.ac.rs/handle/123456789/723
AB  - An analysis of incidence of Phytophthora spp. in 732 European nurseries producing forest transplants, larger specimen trees, landscape plants and ornamentals, plus 2525 areas in which trees and shrubs were planted, is presented based on work conducted by 38 research groups in 23 European countries between 1972 and 2013. Forty-nine Phytophthora taxa were recorded in 670 nurseries (91.5%); within these nurseries, 1614 of 1992 nursery stands (81.0%) were infested, although most affected plants appeared healthy. In forest and landscape plantings, 56 Phytophthora taxa were recovered from 1667 of 2525 tested sites (66.0%). Affected plants frequently showed symptoms such as crown thinning, chlorosis and dieback caused by extensive fine root losses and/or collar rot. Many well-known highly damaging host-Phytophthora combinations were frequently detected but 297 and 407 new Phytophthora-host associations were also observed in nurseries and plantings, respectively. On average, 1.3 Phytophthora species/taxa per infested nursery stand and planting site were isolated. At least 47 of the 68 Phytophthora species/taxa detected in nurseries and plantings were exotic species several of which are considered well established in both nurseries and plantings in Europe. Seven known Phytophthora species/taxa were found for the first time in Europe, while 10 taxa had not been previously recorded from nurseries or plantings; in addition, 5 taxa were first detections on woody plant species. Seven Phytophthora taxa were previously unknown to science. The reasons for these failures of plant biosecurity in Europe, implications for forest and semi-natural ecosystems and possible ways to improve biosecurity are discussed.
T2  - Forest Pathology
T1  - Widespread Phytophthora infestations in European nurseries put forest, semi-natural and horticultural ecosystems at high risk of Phytophthora diseases
EP  - 163
IS  - 2
SP  - 134
VL  - 46
DO  - 10.1111/efp.12239
UR  - conv_1209
ER  - 

@article{
author = "Jung, T. and Orlikowski, L. and Henricot, B. and Abad-Campos, P. and Aday, A. G. and Aguin Casal, O. and Bakonyi, J. and Cacciola, S. O. and Cech, T. and Chavarriaga, D. and Corcobado, Tamara and Cravador, A. and Decourcelle, T. and Denton, G. and Diamandis, S. and Dogmus-Lehtijaervi, H. T. and Franceschini, A. and Ginetti, B. and Green, Samantha and Glavendekić, Milka and Hantula, J. and Hartmann, G. and Herrero, M. and Ivić, D. and Horta Jung, M. and Lilja, A. and Keča, Nenad and Kramarets, V. and Lyubenova, A. and Machado, H. and Magnano di San Lio, G. and Mansilla Vazquez, P. J. and Marcais, B. and Matsiakh, I. and Milenković, Ivan and Moricca, S. and Nagy, Zoltan and Nechwatal, J. and Olsson, C. and Oszako, Tomasz and Pane, A. and Paplomatas, E. J. and Pintos Varela, C. and Prospero, Simone and Rial Martinez, C. and Rigling, D. and Robin, Cecile and Rytkoenen, A. and Sanchez, M. E. and Sanz Ros, A. V. and Scanu, Bruno and Schlenzig, A. and Schumacher, J. and Slavov, S. and Solla, Alejandro and Sousa, E. and Stenlid, J. and Talgo, Venche and Tomić, Z. and Tsopelas, Panaghiotis and Vannini, A. and Vettraino, Anna Maria and Wenneker, M. and Woodward, S. and Perez-Sierra, Ana",
year = "2016",
abstract = "An analysis of incidence of Phytophthora spp. in 732 European nurseries producing forest transplants, larger specimen trees, landscape plants and ornamentals, plus 2525 areas in which trees and shrubs were planted, is presented based on work conducted by 38 research groups in 23 European countries between 1972 and 2013. Forty-nine Phytophthora taxa were recorded in 670 nurseries (91.5%); within these nurseries, 1614 of 1992 nursery stands (81.0%) were infested, although most affected plants appeared healthy. In forest and landscape plantings, 56 Phytophthora taxa were recovered from 1667 of 2525 tested sites (66.0%). Affected plants frequently showed symptoms such as crown thinning, chlorosis and dieback caused by extensive fine root losses and/or collar rot. Many well-known highly damaging host-Phytophthora combinations were frequently detected but 297 and 407 new Phytophthora-host associations were also observed in nurseries and plantings, respectively. On average, 1.3 Phytophthora species/taxa per infested nursery stand and planting site were isolated. At least 47 of the 68 Phytophthora species/taxa detected in nurseries and plantings were exotic species several of which are considered well established in both nurseries and plantings in Europe. Seven known Phytophthora species/taxa were found for the first time in Europe, while 10 taxa had not been previously recorded from nurseries or plantings; in addition, 5 taxa were first detections on woody plant species. Seven Phytophthora taxa were previously unknown to science. The reasons for these failures of plant biosecurity in Europe, implications for forest and semi-natural ecosystems and possible ways to improve biosecurity are discussed.",
journal = "Forest Pathology",
title = "Widespread Phytophthora infestations in European nurseries put forest, semi-natural and horticultural ecosystems at high risk of Phytophthora diseases",
pages = "163-134",
number = "2",
volume = "46",
doi = "10.1111/efp.12239",
url = "conv_1209"
}

Jung, T., Orlikowski, L., Henricot, B., Abad-Campos, P., Aday, A. G., Aguin Casal, O., Bakonyi, J., Cacciola, S. O., Cech, T., Chavarriaga, D., Corcobado, T., Cravador, A., Decourcelle, T., Denton, G., Diamandis, S., Dogmus-Lehtijaervi, H. T., Franceschini, A., Ginetti, B., Green, S., Glavendekić, M., Hantula, J., Hartmann, G., Herrero, M., Ivić, D., Horta Jung, M., Lilja, A., Keča, N., Kramarets, V., Lyubenova, A., Machado, H., Magnano di San Lio, G., Mansilla Vazquez, P. J., Marcais, B., Matsiakh, I., Milenković, I., Moricca, S., Nagy, Z., Nechwatal, J., Olsson, C., Oszako, T., Pane, A., Paplomatas, E. J., Pintos Varela, C., Prospero, S., Rial Martinez, C., Rigling, D., Robin, C., Rytkoenen, A., Sanchez, M. E., Sanz Ros, A. V., Scanu, B., Schlenzig, A., Schumacher, J., Slavov, S., Solla, A., Sousa, E., Stenlid, J., Talgo, V., Tomić, Z., Tsopelas, P., Vannini, A., Vettraino, A. M., Wenneker, M., Woodward, S.,& Perez-Sierra, A.. (2016). Widespread Phytophthora infestations in European nurseries put forest, semi-natural and horticultural ecosystems at high risk of Phytophthora diseases. in Forest Pathology, 46(2), 134-163.
https://doi.org/10.1111/efp.12239
conv_1209

Jung T, Orlikowski L, Henricot B, Abad-Campos P, Aday AG, Aguin Casal O, Bakonyi J, Cacciola SO, Cech T, Chavarriaga D, Corcobado T, Cravador A, Decourcelle T, Denton G, Diamandis S, Dogmus-Lehtijaervi HT, Franceschini A, Ginetti B, Green S, Glavendekić M, Hantula J, Hartmann G, Herrero M, Ivić D, Horta Jung M, Lilja A, Keča N, Kramarets V, Lyubenova A, Machado H, Magnano di San Lio G, Mansilla Vazquez PJ, Marcais B, Matsiakh I, Milenković I, Moricca S, Nagy Z, Nechwatal J, Olsson C, Oszako T, Pane A, Paplomatas EJ, Pintos Varela C, Prospero S, Rial Martinez C, Rigling D, Robin C, Rytkoenen A, Sanchez ME, Sanz Ros AV, Scanu B, Schlenzig A, Schumacher J, Slavov S, Solla A, Sousa E, Stenlid J, Talgo V, Tomić Z, Tsopelas P, Vannini A, Vettraino AM, Wenneker M, Woodward S, Perez-Sierra A. Widespread Phytophthora infestations in European nurseries put forest, semi-natural and horticultural ecosystems at high risk of Phytophthora diseases. in Forest Pathology. 2016;46(2):134-163.
doi:10.1111/efp.12239
conv_1209 .

Jung, T., Orlikowski, L., Henricot, B., Abad-Campos, P., Aday, A. G., Aguin Casal, O., Bakonyi, J., Cacciola, S. O., Cech, T., Chavarriaga, D., Corcobado, Tamara, Cravador, A., Decourcelle, T., Denton, G., Diamandis, S., Dogmus-Lehtijaervi, H. T., Franceschini, A., Ginetti, B., Green, Samantha, Glavendekić, Milka, Hantula, J., Hartmann, G., Herrero, M., Ivić, D., Horta Jung, M., Lilja, A., Keča, Nenad, Kramarets, V., Lyubenova, A., Machado, H., Magnano di San Lio, G., Mansilla Vazquez, P. J., Marcais, B., Matsiakh, I., Milenković, Ivan, Moricca, S., Nagy, Zoltan, Nechwatal, J., Olsson, C., Oszako, Tomasz, Pane, A., Paplomatas, E. J., Pintos Varela, C., Prospero, Simone, Rial Martinez, C., Rigling, D., Robin, Cecile, Rytkoenen, A., Sanchez, M. E., Sanz Ros, A. V., Scanu, Bruno, Schlenzig, A., Schumacher, J., Slavov, S., Solla, Alejandro, Sousa, E., Stenlid, J., Talgo, Venche, Tomić, Z., Tsopelas, Panaghiotis, Vannini, A., Vettraino, Anna Maria, Wenneker, M., Woodward, S., Perez-Sierra, Ana, "Widespread Phytophthora infestations in European nurseries put forest, semi-natural and horticultural ecosystems at high risk of Phytophthora diseases" in Forest Pathology, 46, no. 2 (2016):134-163,
https://doi.org/10.1111/efp.12239 .,
conv_1209 .