TY  - JOUR
AU  - Machacova, Marketa
AU  - Tomaskova, Ivana
AU  - Corcobado, Tamara
AU  - Nagy, Zoltan
AU  - Milanović, Slobodan
AU  - Janousek, Josef
AU  - Peskova, Vitezslava
AU  - Cepl, Jaroslav
AU  - Gezan, Salvador
AU  - Nakladal, Oto
AU  - Zumr, Vaclav
AU  - Kalyniukova, Alina
AU  - Milenković, Ivan
AU  - Jung, Thomas
PY  - 2024
UR  - https://omorika.sfb.bg.ac.rs/handle/123456789/1522
AB  - Introduction: Mortality of the riparian alder population caused by Phytophthora pathogens has been studied for over 20 years throughout Europe, recently gaining more importance in the context of evident climate change. The main objective of this study was to examine the pathogenicity of species from the "Phytophthora alni complex" present in the Czech Republic (P. x alni and P. uniformis) and P. plurivora to Alnus glutinosa seedlings grown at ambient and elevated CO2 concentration. Methods: An underbark inoculation test was performed with seedlings grown from seeds collected from two Czech alder populations, one suffering from severe Phytophthora decline and the other disease-free. Results: The results showed significant differences in lesion development and seedling mortality. After a 13-week experimental period, at both CO2 levels P. x alni and P. uniformis showed high aggressiveness to A. glutinosa seedlings causing lesions of variable sizes and mortality of 33.3%, and 45.8% of plants, respectively. In contrast, P. plurivora did not cause mortality to any plant, and lesion sizes did not differ significantly from those in control plants. Physiological measurements did not reveal any significant differences between Phytophthora species except for plants inoculated with P. plurivora showing increased values in specific physiological parameters 4 weeks post-inoculation. Net photosynthesis decreased over the measurement period in all treatments with significant differences found between measurements conducted 2 and 4 weeks after the inoculation. Transpiration showed a decreasing trend in all inoculated plants with no significant differences between Phytophthora species at both CO2 levels. Chemical analyses of root samples showed high variability in sugars and phenolic compounds related to the plant's health status. Discussion: This is the first study to examine the response of alder seedlings to Phytophthora pathogens at different CO2 levels. The findings demonstrate high aggressiveness of P. x alni and P. uniformis and weaker aggressiveness of P. plurivora to alder seedlings regardless of the CO2 level.
T2  - Frontiers in Forests and Global Change
T1  - Response of Alnus glutinosa to Phytophthora bark infections at ambient and elevated CO 2 levels
VL  - 7
DO  - 10.3389/ffgc.2024.1379791
UR  - conv_1782
ER  - 

@article{
author = "Machacova, Marketa and Tomaskova, Ivana and Corcobado, Tamara and Nagy, Zoltan and Milanović, Slobodan and Janousek, Josef and Peskova, Vitezslava and Cepl, Jaroslav and Gezan, Salvador and Nakladal, Oto and Zumr, Vaclav and Kalyniukova, Alina and Milenković, Ivan and Jung, Thomas",
year = "2024",
abstract = "Introduction: Mortality of the riparian alder population caused by Phytophthora pathogens has been studied for over 20 years throughout Europe, recently gaining more importance in the context of evident climate change. The main objective of this study was to examine the pathogenicity of species from the "Phytophthora alni complex" present in the Czech Republic (P. x alni and P. uniformis) and P. plurivora to Alnus glutinosa seedlings grown at ambient and elevated CO2 concentration. Methods: An underbark inoculation test was performed with seedlings grown from seeds collected from two Czech alder populations, one suffering from severe Phytophthora decline and the other disease-free. Results: The results showed significant differences in lesion development and seedling mortality. After a 13-week experimental period, at both CO2 levels P. x alni and P. uniformis showed high aggressiveness to A. glutinosa seedlings causing lesions of variable sizes and mortality of 33.3%, and 45.8% of plants, respectively. In contrast, P. plurivora did not cause mortality to any plant, and lesion sizes did not differ significantly from those in control plants. Physiological measurements did not reveal any significant differences between Phytophthora species except for plants inoculated with P. plurivora showing increased values in specific physiological parameters 4 weeks post-inoculation. Net photosynthesis decreased over the measurement period in all treatments with significant differences found between measurements conducted 2 and 4 weeks after the inoculation. Transpiration showed a decreasing trend in all inoculated plants with no significant differences between Phytophthora species at both CO2 levels. Chemical analyses of root samples showed high variability in sugars and phenolic compounds related to the plant's health status. Discussion: This is the first study to examine the response of alder seedlings to Phytophthora pathogens at different CO2 levels. The findings demonstrate high aggressiveness of P. x alni and P. uniformis and weaker aggressiveness of P. plurivora to alder seedlings regardless of the CO2 level.",
journal = "Frontiers in Forests and Global Change",
title = "Response of Alnus glutinosa to Phytophthora bark infections at ambient and elevated CO 2 levels",
volume = "7",
doi = "10.3389/ffgc.2024.1379791",
url = "conv_1782"
}

Machacova, M., Tomaskova, I., Corcobado, T., Nagy, Z., Milanović, S., Janousek, J., Peskova, V., Cepl, J., Gezan, S., Nakladal, O., Zumr, V., Kalyniukova, A., Milenković, I.,& Jung, T.. (2024). Response of Alnus glutinosa to Phytophthora bark infections at ambient and elevated CO 2 levels. in Frontiers in Forests and Global Change, 7.
https://doi.org/10.3389/ffgc.2024.1379791
conv_1782

Machacova M, Tomaskova I, Corcobado T, Nagy Z, Milanović S, Janousek J, Peskova V, Cepl J, Gezan S, Nakladal O, Zumr V, Kalyniukova A, Milenković I, Jung T. Response of Alnus glutinosa to Phytophthora bark infections at ambient and elevated CO 2 levels. in Frontiers in Forests and Global Change. 2024;7.
doi:10.3389/ffgc.2024.1379791
conv_1782 .

Machacova, Marketa, Tomaskova, Ivana, Corcobado, Tamara, Nagy, Zoltan, Milanović, Slobodan, Janousek, Josef, Peskova, Vitezslava, Cepl, Jaroslav, Gezan, Salvador, Nakladal, Oto, Zumr, Vaclav, Kalyniukova, Alina, Milenković, Ivan, Jung, Thomas, "Response of Alnus glutinosa to Phytophthora bark infections at ambient and elevated CO 2 levels" in Frontiers in Forests and Global Change, 7 (2024),
https://doi.org/10.3389/ffgc.2024.1379791 .,
conv_1782 .

TY  - JOUR
AU  - Bacova, Aneta
AU  - Cooke, David E. L.
AU  - Milenković, Ivan
AU  - Majek, Tomas
AU  - Nagy, Zoltan
AU  - Corcobado, Tamara
AU  - Randall, Eva
AU  - Keillor, Beatrix
AU  - Cock, Peter J. A.
AU  - Horta Jung, Marilia
AU  - Jung, Thomas
AU  - Tomsovsky, Michal
PY  - 2024
UR  - https://omorika.sfb.bg.ac.rs/handle/123456789/1466
AB  - Phytophthora diversity was examined in eight forest and ornamental nurseries in the Czech Republic. A leaf baiting isolation technique and, in two nurseries, also Illumina DNA metabarcoding were used to reveal the diversity of Phytophthora in soil and irrigation water and compare the efficacy of both approaches. In total, baiting revealed the occurrence of 12 Phytophthora taxa in 59.4% of soil samples from seven (87.5%) nurseries. Additional baiting of compost was carried out in two nurseries and two Phytophthora species were recovered. Irrigation water was examined in three nurseries by baiting or by direct isolation from partially decomposed floating leaves collected from the water source, and two Phytophthora species were obtained. Illumina sequencing of soil and water samples was done in two and one nurseries, respectively. Phytophthora reads were identified as 45 Phytophthora taxa, 15 of them previously unknown taxa from Clades 6, 7, 8 and 9. Another 11 taxa belonged to known or undescribed species of the oomycete genera Globisporangium, Hyaloperonospora, Nothophytophthora, Peronospora and Plasmopara. Overall, with both techniques 50 Phytophthora taxa were detected with five taxa (P. taxon organica, P. plurivora, P. rosacearum, P. syringae and P. transitoria) being exclusively detected by baiting and 38 only by DNA metabarcoding. Particularly common records in DNA barcoding were P. cinnamomi and P. lateralis which were not isolated by baiting. Only seven species were detected by both techniques. It is recommended to use the combination of both techniques to determine true diversity of Phytophthora in managed or natural ecosystems and reveal the presence of rare or unknown Phytophthora taxa.
T2  - European Journal of Plant Pathology
T1  - Hidden Phytophthora diversity unveiled in tree nurseries of the Czech Republic with traditional and metabarcoding techniques
EP  - 156
IS  - 1
SP  - 131
VL  - 170
DO  - 10.1007/s10658-024-02886-1
UR  - conv_1791
ER  - 

@article{
author = "Bacova, Aneta and Cooke, David E. L. and Milenković, Ivan and Majek, Tomas and Nagy, Zoltan and Corcobado, Tamara and Randall, Eva and Keillor, Beatrix and Cock, Peter J. A. and Horta Jung, Marilia and Jung, Thomas and Tomsovsky, Michal",
year = "2024",
abstract = "Phytophthora diversity was examined in eight forest and ornamental nurseries in the Czech Republic. A leaf baiting isolation technique and, in two nurseries, also Illumina DNA metabarcoding were used to reveal the diversity of Phytophthora in soil and irrigation water and compare the efficacy of both approaches. In total, baiting revealed the occurrence of 12 Phytophthora taxa in 59.4% of soil samples from seven (87.5%) nurseries. Additional baiting of compost was carried out in two nurseries and two Phytophthora species were recovered. Irrigation water was examined in three nurseries by baiting or by direct isolation from partially decomposed floating leaves collected from the water source, and two Phytophthora species were obtained. Illumina sequencing of soil and water samples was done in two and one nurseries, respectively. Phytophthora reads were identified as 45 Phytophthora taxa, 15 of them previously unknown taxa from Clades 6, 7, 8 and 9. Another 11 taxa belonged to known or undescribed species of the oomycete genera Globisporangium, Hyaloperonospora, Nothophytophthora, Peronospora and Plasmopara. Overall, with both techniques 50 Phytophthora taxa were detected with five taxa (P. taxon organica, P. plurivora, P. rosacearum, P. syringae and P. transitoria) being exclusively detected by baiting and 38 only by DNA metabarcoding. Particularly common records in DNA barcoding were P. cinnamomi and P. lateralis which were not isolated by baiting. Only seven species were detected by both techniques. It is recommended to use the combination of both techniques to determine true diversity of Phytophthora in managed or natural ecosystems and reveal the presence of rare or unknown Phytophthora taxa.",
journal = "European Journal of Plant Pathology",
title = "Hidden Phytophthora diversity unveiled in tree nurseries of the Czech Republic with traditional and metabarcoding techniques",
pages = "156-131",
number = "1",
volume = "170",
doi = "10.1007/s10658-024-02886-1",
url = "conv_1791"
}

Bacova, A., Cooke, D. E. L., Milenković, I., Majek, T., Nagy, Z., Corcobado, T., Randall, E., Keillor, B., Cock, P. J. A., Horta Jung, M., Jung, T.,& Tomsovsky, M.. (2024). Hidden Phytophthora diversity unveiled in tree nurseries of the Czech Republic with traditional and metabarcoding techniques. in European Journal of Plant Pathology, 170(1), 131-156.
https://doi.org/10.1007/s10658-024-02886-1
conv_1791

Bacova A, Cooke DEL, Milenković I, Majek T, Nagy Z, Corcobado T, Randall E, Keillor B, Cock PJA, Horta Jung M, Jung T, Tomsovsky M. Hidden Phytophthora diversity unveiled in tree nurseries of the Czech Republic with traditional and metabarcoding techniques. in European Journal of Plant Pathology. 2024;170(1):131-156.
doi:10.1007/s10658-024-02886-1
conv_1791 .

Bacova, Aneta, Cooke, David E. L., Milenković, Ivan, Majek, Tomas, Nagy, Zoltan, Corcobado, Tamara, Randall, Eva, Keillor, Beatrix, Cock, Peter J. A., Horta Jung, Marilia, Jung, Thomas, Tomsovsky, Michal, "Hidden Phytophthora diversity unveiled in tree nurseries of the Czech Republic with traditional and metabarcoding techniques" in European Journal of Plant Pathology, 170, no. 1 (2024):131-156,
https://doi.org/10.1007/s10658-024-02886-1 .,
conv_1791 .

TY  - JOUR
AU  - Jung, T.
AU  - Milenković, Ivan
AU  - Balci, Y.
AU  - Janousek, J.
AU  - Kudlacek, Tomas
AU  - Nagy, Zoltan
AU  - Baharuddin, B.
AU  - Bakonyi, J.
AU  - Broders, Kirk D.
AU  - Cacciola, S. O.
AU  - Chang, T. -T.
AU  - Chi, N. M.
AU  - Corcobado, Tamara
AU  - Cravador, A.
AU  - Đorđević, B.
AU  - Duran, A.
AU  - Ferreira, M.
AU  - Fu, C. -H.
AU  - Garcia, L.
AU  - Hieno, A.
AU  - Ho, H. -H.
AU  - Hong, C.
AU  - Junaid, M.
AU  - Kageyama, K.
AU  - Kuswinanti, T.
AU  - Maia, C.
AU  - Majek, Tomas
AU  - Masuya, H.
AU  - Lio, G. Magnano di San
AU  - Mendieta-Araica, B.
AU  - Nasri, N.
AU  - Oliveira, L. S. S.
AU  - Pane, A.
AU  - Perez-Sierra, Ana
AU  - Rosmana, A.
AU  - von Stowasser, E. Sanfuentes
AU  - Scanu, Bruno
AU  - Singh, R.
AU  - Stanivuković, Zoran
AU  - Tarigan, Marthin
AU  - Thu, P. Q.
AU  - Tomić, Z.
AU  - Tomsovsky, M.
AU  - Uematsu, Seiji
AU  - Webber, Joan
AU  - Zeng, H. -C.
AU  - Zheng, F. -C.
AU  - Brasier, Clive M.
AU  - Horta Jung, Marilia
PY  - 2024
UR  - https://omorika.sfb.bg.ac.rs/handle/123456789/1492
AB  - During 25 surveys of global Phytophthora diversity, conducted between 1998 and 2020, 43 new species were detected in natural ecosystems and, occasionally, in nurseries and outplantings in Europe, Southeast and East Asia and the Americas. Based on a multigene phylogeny of nine nuclear and four mitochondrial gene regions they were assigned to five of the six known subclades, 2a-c, e and f, of Phytophthora major Clade 2 and the new subclade 2g. The evolutionary history of the Clade appears to have involved the pre-Gondwanan divergence of three extant subclades, 2c, 2e and 2f, all having disjunct natural distributions on separate continents and comprising species with a soilborne and aquatic lifestyle and, in addition, a few partially aerial species in Clade 2c; and the post-Gondwanan evolution of subclades 2a and 2g in Southeast/East Asia and 2b in South America, respectively, from their common ancestor. Species in Clade 2g are soilborne whereas Clade 2b comprises both soil-inhabiting and aerial species. Clade 2a has evolved further towards an aerial lifestyle comprising only species which are predominantly or partially airborne. Based on high nuclear heterozygosity levels ca. 38 % of the taxa in Clades 2a and 2b could be some form of hybrid, and the hybridity may be favoured by an A1/A2 breeding system and an aerial life style. Circumstantial evidence suggests the now 93 described species and informally designated taxa in Clade 2 result from both allopatric non-adaptive and sympatric adaptive radiations. They represent most morphological and physiological characters, breeding systems, lifestyles and forms of host specialism found across the Phytophthora clades as a whole, demonstrating the strong biological cohesiveness of the genus. The finding of 43 previously unknown species from a single Phytophthora clade highlight a critical lack of information on the scale of the unknown pathogen threats to forests and natural ecosystems, underlining the risk of basing plant biosecurity protocols mainly on lists of named organisms. More surveys in natural ecosystems of yet unsurveyed regions in Africa, Asia, Central and South America are needed to unveil the full diversity of the clade and the factors driving diversity, speciation and adaptation in Phytophthora.
T2  - Studies in Mycology
T1  - Worldwide forest surveys reveal forty-three new species in Phytophthora major Clade 2 with fundamental implications for the evolution and biogeography of the genus and global plant biosecurity
EP  - 388
IS  - 107
SP  - 251
DO  - 10.3114/sim.2024.107.04
UR  - conv_1770
ER  - 

@article{
author = "Jung, T. and Milenković, Ivan and Balci, Y. and Janousek, J. and Kudlacek, Tomas and Nagy, Zoltan and Baharuddin, B. and Bakonyi, J. and Broders, Kirk D. and Cacciola, S. O. and Chang, T. -T. and Chi, N. M. and Corcobado, Tamara and Cravador, A. and Đorđević, B. and Duran, A. and Ferreira, M. and Fu, C. -H. and Garcia, L. and Hieno, A. and Ho, H. -H. and Hong, C. and Junaid, M. and Kageyama, K. and Kuswinanti, T. and Maia, C. and Majek, Tomas and Masuya, H. and Lio, G. Magnano di San and Mendieta-Araica, B. and Nasri, N. and Oliveira, L. S. S. and Pane, A. and Perez-Sierra, Ana and Rosmana, A. and von Stowasser, E. Sanfuentes and Scanu, Bruno and Singh, R. and Stanivuković, Zoran and Tarigan, Marthin and Thu, P. Q. and Tomić, Z. and Tomsovsky, M. and Uematsu, Seiji and Webber, Joan and Zeng, H. -C. and Zheng, F. -C. and Brasier, Clive M. and Horta Jung, Marilia",
year = "2024",
abstract = "During 25 surveys of global Phytophthora diversity, conducted between 1998 and 2020, 43 new species were detected in natural ecosystems and, occasionally, in nurseries and outplantings in Europe, Southeast and East Asia and the Americas. Based on a multigene phylogeny of nine nuclear and four mitochondrial gene regions they were assigned to five of the six known subclades, 2a-c, e and f, of Phytophthora major Clade 2 and the new subclade 2g. The evolutionary history of the Clade appears to have involved the pre-Gondwanan divergence of three extant subclades, 2c, 2e and 2f, all having disjunct natural distributions on separate continents and comprising species with a soilborne and aquatic lifestyle and, in addition, a few partially aerial species in Clade 2c; and the post-Gondwanan evolution of subclades 2a and 2g in Southeast/East Asia and 2b in South America, respectively, from their common ancestor. Species in Clade 2g are soilborne whereas Clade 2b comprises both soil-inhabiting and aerial species. Clade 2a has evolved further towards an aerial lifestyle comprising only species which are predominantly or partially airborne. Based on high nuclear heterozygosity levels ca. 38 % of the taxa in Clades 2a and 2b could be some form of hybrid, and the hybridity may be favoured by an A1/A2 breeding system and an aerial life style. Circumstantial evidence suggests the now 93 described species and informally designated taxa in Clade 2 result from both allopatric non-adaptive and sympatric adaptive radiations. They represent most morphological and physiological characters, breeding systems, lifestyles and forms of host specialism found across the Phytophthora clades as a whole, demonstrating the strong biological cohesiveness of the genus. The finding of 43 previously unknown species from a single Phytophthora clade highlight a critical lack of information on the scale of the unknown pathogen threats to forests and natural ecosystems, underlining the risk of basing plant biosecurity protocols mainly on lists of named organisms. More surveys in natural ecosystems of yet unsurveyed regions in Africa, Asia, Central and South America are needed to unveil the full diversity of the clade and the factors driving diversity, speciation and adaptation in Phytophthora.",
journal = "Studies in Mycology",
title = "Worldwide forest surveys reveal forty-three new species in Phytophthora major Clade 2 with fundamental implications for the evolution and biogeography of the genus and global plant biosecurity",
pages = "388-251",
number = "107",
doi = "10.3114/sim.2024.107.04",
url = "conv_1770"
}

Jung, T., Milenković, I., Balci, Y., Janousek, J., Kudlacek, T., Nagy, Z., Baharuddin, B., Bakonyi, J., Broders, K. D., Cacciola, S. O., Chang, T. -T., Chi, N. M., Corcobado, T., Cravador, A., Đorđević, B., Duran, A., Ferreira, M., Fu, C. -H., Garcia, L., Hieno, A., Ho, H. -H., Hong, C., Junaid, M., Kageyama, K., Kuswinanti, T., Maia, C., Majek, T., Masuya, H., Lio, G. M. d. S., Mendieta-Araica, B., Nasri, N., Oliveira, L. S. S., Pane, A., Perez-Sierra, A., Rosmana, A., von Stowasser, E. S., Scanu, B., Singh, R., Stanivuković, Z., Tarigan, M., Thu, P. Q., Tomić, Z., Tomsovsky, M., Uematsu, S., Webber, J., Zeng, H. -C., Zheng, F. -C., Brasier, C. M.,& Horta Jung, M.. (2024). Worldwide forest surveys reveal forty-three new species in Phytophthora major Clade 2 with fundamental implications for the evolution and biogeography of the genus and global plant biosecurity. in Studies in Mycology(107), 251-388.
https://doi.org/10.3114/sim.2024.107.04
conv_1770

Jung T, Milenković I, Balci Y, Janousek J, Kudlacek T, Nagy Z, Baharuddin B, Bakonyi J, Broders KD, Cacciola SO, Chang T-, Chi NM, Corcobado T, Cravador A, Đorđević B, Duran A, Ferreira M, Fu C-, Garcia L, Hieno A, Ho H-, Hong C, Junaid M, Kageyama K, Kuswinanti T, Maia C, Majek T, Masuya H, Lio GMDS, Mendieta-Araica B, Nasri N, Oliveira LSS, Pane A, Perez-Sierra A, Rosmana A, von Stowasser ES, Scanu B, Singh R, Stanivuković Z, Tarigan M, Thu PQ, Tomić Z, Tomsovsky M, Uematsu S, Webber J, Zeng H-, Zheng F-, Brasier CM, Horta Jung M. Worldwide forest surveys reveal forty-three new species in Phytophthora major Clade 2 with fundamental implications for the evolution and biogeography of the genus and global plant biosecurity. in Studies in Mycology. 2024;(107):251-388.
doi:10.3114/sim.2024.107.04
conv_1770 .

Jung, T., Milenković, Ivan, Balci, Y., Janousek, J., Kudlacek, Tomas, Nagy, Zoltan, Baharuddin, B., Bakonyi, J., Broders, Kirk D., Cacciola, S. O., Chang, T. -T., Chi, N. M., Corcobado, Tamara, Cravador, A., Đorđević, B., Duran, A., Ferreira, M., Fu, C. -H., Garcia, L., Hieno, A., Ho, H. -H., Hong, C., Junaid, M., Kageyama, K., Kuswinanti, T., Maia, C., Majek, Tomas, Masuya, H., Lio, G. Magnano di San, Mendieta-Araica, B., Nasri, N., Oliveira, L. S. S., Pane, A., Perez-Sierra, Ana, Rosmana, A., von Stowasser, E. Sanfuentes, Scanu, Bruno, Singh, R., Stanivuković, Zoran, Tarigan, Marthin, Thu, P. Q., Tomić, Z., Tomsovsky, M., Uematsu, Seiji, Webber, Joan, Zeng, H. -C., Zheng, F. -C., Brasier, Clive M., Horta Jung, Marilia, "Worldwide forest surveys reveal forty-three new species in Phytophthora major Clade 2 with fundamental implications for the evolution and biogeography of the genus and global plant biosecurity" in Studies in Mycology, no. 107 (2024):251-388,
https://doi.org/10.3114/sim.2024.107.04 .,
conv_1770 .

TY  - JOUR
AU  - Jung, T.
AU  - Milenković, Ivan
AU  - Corcobado, Tamara
AU  - Majek, Tomas
AU  - Janousek, J.
AU  - Kudlacek, Tomas
AU  - Tomsovsky, M.
AU  - Nagy, Zoltan
AU  - Duran, A.
AU  - Tarigan, Marthin
AU  - von Stowasser, E. Sanfuentes
AU  - Singh, R.
AU  - Ferreira, M.
AU  - Webber, Joan
AU  - Scanu, Bruno
AU  - Chi, N. M.
AU  - Thu, P. Q.
AU  - Junaid, M.
AU  - Rosmana, A.
AU  - Baharuddin, B.
AU  - Kuswinanti, T.
AU  - Nasri, N.
AU  - Kageyama, K.
AU  - Hieno, A.
AU  - Masuya, H.
AU  - Uematsu, Seiji
AU  - Oliva, J.
AU  - Redondo, Miguel A.
AU  - Maia, C.
AU  - Matsiakh, I.
AU  - Kramarets, V.
AU  - O'Hanlon, R.
AU  - Tomić, Z.
AU  - Brasier, Clive M.
AU  - Horta Jung, Marilia
PY  - 2022
UR  - https://omorika.sfb.bg.ac.rs/handle/123456789/1314
AB  - During extensive surveys of global Phytophthora diversity 14 new species detected in natural ecosystems in Chile, Indonesia, USA (Louisiana), Sweden, Ukraine and Vietnam were assigned to Phytophthora major Clade 10 based on a multigene phylogeny of nine nuclear and three mitochondrial gene regions. Clade 10 now comprises three subclades. Subclades 10a and 10b contain species with nonpapillate sporangia, a range of breeding systems and a mainly soil-and waterborne lifestyle. These include the previously described P. afrocarpa, P. gallica and P. intercalaris and eight of the new species: P. ludoviciana, P. procera, P. pseudogallica, P. scandinavica, P. subarctica, P. tenui- mura, P. tonkinensis and P. ukrainensis. In contrast, all species in Subclade 10c have papillate sporangia and are self-fertile (or homothallic) with an aerial lifestyle including the known P. boehmeriae, P. gondwanensis, P. kernoviae and P. morindae and the new species P. celebensis, P. chilensis, P. javanensis, P. multiglobulosa, P. pseudochilensis and P. pseudokernoviae. All new Phytophthora species differed from each other and from related species by their unique combinations of morphological characters, breeding systems, cardinal temperatures and growth rates. The biogeography and evolutionary history of Clade 10 are discussed. We propose that the three subclades originated via the early divergence of pre-Gondwanan ancestors  gt  175 Mya into water-and soilborne and aerially dispersed lineages and subsequently underwent multiple allopatric and sympatric radiations during their global spread.
T2  - Persoonia
T1  - Extensive morphological and behavioural diversity among fourteen new and seven described species in Phytophthora Clade 10 and its evolutionary implications
EP  - 57
SP  - 1
VL  - 49
DO  - 10.3767/persoonia.2022.49.01
UR  - conv_1684
ER  - 

@article{
author = "Jung, T. and Milenković, Ivan and Corcobado, Tamara and Majek, Tomas and Janousek, J. and Kudlacek, Tomas and Tomsovsky, M. and Nagy, Zoltan and Duran, A. and Tarigan, Marthin and von Stowasser, E. Sanfuentes and Singh, R. and Ferreira, M. and Webber, Joan and Scanu, Bruno and Chi, N. M. and Thu, P. Q. and Junaid, M. and Rosmana, A. and Baharuddin, B. and Kuswinanti, T. and Nasri, N. and Kageyama, K. and Hieno, A. and Masuya, H. and Uematsu, Seiji and Oliva, J. and Redondo, Miguel A. and Maia, C. and Matsiakh, I. and Kramarets, V. and O'Hanlon, R. and Tomić, Z. and Brasier, Clive M. and Horta Jung, Marilia",
year = "2022",
abstract = "During extensive surveys of global Phytophthora diversity 14 new species detected in natural ecosystems in Chile, Indonesia, USA (Louisiana), Sweden, Ukraine and Vietnam were assigned to Phytophthora major Clade 10 based on a multigene phylogeny of nine nuclear and three mitochondrial gene regions. Clade 10 now comprises three subclades. Subclades 10a and 10b contain species with nonpapillate sporangia, a range of breeding systems and a mainly soil-and waterborne lifestyle. These include the previously described P. afrocarpa, P. gallica and P. intercalaris and eight of the new species: P. ludoviciana, P. procera, P. pseudogallica, P. scandinavica, P. subarctica, P. tenui- mura, P. tonkinensis and P. ukrainensis. In contrast, all species in Subclade 10c have papillate sporangia and are self-fertile (or homothallic) with an aerial lifestyle including the known P. boehmeriae, P. gondwanensis, P. kernoviae and P. morindae and the new species P. celebensis, P. chilensis, P. javanensis, P. multiglobulosa, P. pseudochilensis and P. pseudokernoviae. All new Phytophthora species differed from each other and from related species by their unique combinations of morphological characters, breeding systems, cardinal temperatures and growth rates. The biogeography and evolutionary history of Clade 10 are discussed. We propose that the three subclades originated via the early divergence of pre-Gondwanan ancestors  gt  175 Mya into water-and soilborne and aerially dispersed lineages and subsequently underwent multiple allopatric and sympatric radiations during their global spread.",
journal = "Persoonia",
title = "Extensive morphological and behavioural diversity among fourteen new and seven described species in Phytophthora Clade 10 and its evolutionary implications",
pages = "57-1",
volume = "49",
doi = "10.3767/persoonia.2022.49.01",
url = "conv_1684"
}

Jung, T., Milenković, I., Corcobado, T., Majek, T., Janousek, J., Kudlacek, T., Tomsovsky, M., Nagy, Z., Duran, A., Tarigan, M., von Stowasser, E. S., Singh, R., Ferreira, M., Webber, J., Scanu, B., Chi, N. M., Thu, P. Q., Junaid, M., Rosmana, A., Baharuddin, B., Kuswinanti, T., Nasri, N., Kageyama, K., Hieno, A., Masuya, H., Uematsu, S., Oliva, J., Redondo, M. A., Maia, C., Matsiakh, I., Kramarets, V., O'Hanlon, R., Tomić, Z., Brasier, C. M.,& Horta Jung, M.. (2022). Extensive morphological and behavioural diversity among fourteen new and seven described species in Phytophthora Clade 10 and its evolutionary implications. in Persoonia, 49, 1-57.
https://doi.org/10.3767/persoonia.2022.49.01
conv_1684

Jung T, Milenković I, Corcobado T, Majek T, Janousek J, Kudlacek T, Tomsovsky M, Nagy Z, Duran A, Tarigan M, von Stowasser ES, Singh R, Ferreira M, Webber J, Scanu B, Chi NM, Thu PQ, Junaid M, Rosmana A, Baharuddin B, Kuswinanti T, Nasri N, Kageyama K, Hieno A, Masuya H, Uematsu S, Oliva J, Redondo MA, Maia C, Matsiakh I, Kramarets V, O'Hanlon R, Tomić Z, Brasier CM, Horta Jung M. Extensive morphological and behavioural diversity among fourteen new and seven described species in Phytophthora Clade 10 and its evolutionary implications. in Persoonia. 2022;49:1-57.
doi:10.3767/persoonia.2022.49.01
conv_1684 .

Jung, T., Milenković, Ivan, Corcobado, Tamara, Majek, Tomas, Janousek, J., Kudlacek, Tomas, Tomsovsky, M., Nagy, Zoltan, Duran, A., Tarigan, Marthin, von Stowasser, E. Sanfuentes, Singh, R., Ferreira, M., Webber, Joan, Scanu, Bruno, Chi, N. M., Thu, P. Q., Junaid, M., Rosmana, A., Baharuddin, B., Kuswinanti, T., Nasri, N., Kageyama, K., Hieno, A., Masuya, H., Uematsu, Seiji, Oliva, J., Redondo, Miguel A., Maia, C., Matsiakh, I., Kramarets, V., O'Hanlon, R., Tomić, Z., Brasier, Clive M., Horta Jung, Marilia, "Extensive morphological and behavioural diversity among fourteen new and seven described species in Phytophthora Clade 10 and its evolutionary implications" in Persoonia, 49 (2022):1-57,
https://doi.org/10.3767/persoonia.2022.49.01 .,
conv_1684 .

TY  - JOUR
AU  - Jung, Thomas
AU  - Horta Jung, Marilia
AU  - Webber, Joan
AU  - Kageyama, Koji
AU  - Hieno, Ayaka
AU  - Masuya, Hayato
AU  - Uematsu, Seiji
AU  - Perez-Sierra, Ana
AU  - Harris, Anna R.
AU  - Forster, Jack
AU  - Rees, Helen
AU  - Scanu, Bruno
AU  - Patra, Sneha
AU  - Kudlacek, Tomas
AU  - Janousek, Josef
AU  - Corcobado, Tamara
AU  - Milenković, Ivan
AU  - Nagy, Zoltan
AU  - Csorba, Ildiko
AU  - Bakonyi, Jozsef
AU  - Brasier, Clive M.
PY  - 2021
UR  - https://omorika.sfb.bg.ac.rs/handle/123456789/1217
AB  - As global plant trade expands, tree disease epidemics caused by pathogen introductions are increasing. Since ca 2000, the introduced oomycete Phytophthora ramorum has caused devastating epidemics in Europe and North America, spreading as four ancient clonal lineages, each of a single mating type, suggesting different geographical origins. We surveyed laurosilva forests for P. ramorum around Fansipan mountain on the Vietnam-China border and on Shikoku and Kyushu islands, southwest Japan. The surveys yielded 71 P. ramorum isolates which we assigned to eight new lineages, IC1 to IC5 from Vietnam and NP1 to NP3 from Japan, based on differences in colony characteristics, gene x environment responses and multigene phylogeny. Molecular phylogenetic trees and networks revealed the eight Asian lineages were dispersed across the topology of the introduced European and North American lineages. The deepest node within P. ramorum, the divergence of lineages NP1 and NP2, was estimated at 0.5 to 1.6 Myr. The Asian lineages were each of a single mating type, and at some locations, lineages of "opposite" mating type were present, suggesting opportunities for inter-lineage recombination. Based on the high level of phenotypic and phylogenetic diversity in the sample populations, the coalescence results and the absence of overt host symptoms, we conclude that P. ramorum comprises many anciently divergent lineages native to the laurosilva forests between eastern Indochina and Japan.
T2  - Journal of Fungi
T1  - The Destructive Tree Pathogen Phytophthora ramorum Originates from the Laurosilva Forests of East Asia
IS  - 3
VL  - 7
DO  - 10.3390/jof7030226
UR  - conv_1536
ER  - 

@article{
author = "Jung, Thomas and Horta Jung, Marilia and Webber, Joan and Kageyama, Koji and Hieno, Ayaka and Masuya, Hayato and Uematsu, Seiji and Perez-Sierra, Ana and Harris, Anna R. and Forster, Jack and Rees, Helen and Scanu, Bruno and Patra, Sneha and Kudlacek, Tomas and Janousek, Josef and Corcobado, Tamara and Milenković, Ivan and Nagy, Zoltan and Csorba, Ildiko and Bakonyi, Jozsef and Brasier, Clive M.",
year = "2021",
abstract = "As global plant trade expands, tree disease epidemics caused by pathogen introductions are increasing. Since ca 2000, the introduced oomycete Phytophthora ramorum has caused devastating epidemics in Europe and North America, spreading as four ancient clonal lineages, each of a single mating type, suggesting different geographical origins. We surveyed laurosilva forests for P. ramorum around Fansipan mountain on the Vietnam-China border and on Shikoku and Kyushu islands, southwest Japan. The surveys yielded 71 P. ramorum isolates which we assigned to eight new lineages, IC1 to IC5 from Vietnam and NP1 to NP3 from Japan, based on differences in colony characteristics, gene x environment responses and multigene phylogeny. Molecular phylogenetic trees and networks revealed the eight Asian lineages were dispersed across the topology of the introduced European and North American lineages. The deepest node within P. ramorum, the divergence of lineages NP1 and NP2, was estimated at 0.5 to 1.6 Myr. The Asian lineages were each of a single mating type, and at some locations, lineages of "opposite" mating type were present, suggesting opportunities for inter-lineage recombination. Based on the high level of phenotypic and phylogenetic diversity in the sample populations, the coalescence results and the absence of overt host symptoms, we conclude that P. ramorum comprises many anciently divergent lineages native to the laurosilva forests between eastern Indochina and Japan.",
journal = "Journal of Fungi",
title = "The Destructive Tree Pathogen Phytophthora ramorum Originates from the Laurosilva Forests of East Asia",
number = "3",
volume = "7",
doi = "10.3390/jof7030226",
url = "conv_1536"
}

Jung, T., Horta Jung, M., Webber, J., Kageyama, K., Hieno, A., Masuya, H., Uematsu, S., Perez-Sierra, A., Harris, A. R., Forster, J., Rees, H., Scanu, B., Patra, S., Kudlacek, T., Janousek, J., Corcobado, T., Milenković, I., Nagy, Z., Csorba, I., Bakonyi, J.,& Brasier, C. M.. (2021). The Destructive Tree Pathogen Phytophthora ramorum Originates from the Laurosilva Forests of East Asia. in Journal of Fungi, 7(3).
https://doi.org/10.3390/jof7030226
conv_1536

Jung T, Horta Jung M, Webber J, Kageyama K, Hieno A, Masuya H, Uematsu S, Perez-Sierra A, Harris AR, Forster J, Rees H, Scanu B, Patra S, Kudlacek T, Janousek J, Corcobado T, Milenković I, Nagy Z, Csorba I, Bakonyi J, Brasier CM. The Destructive Tree Pathogen Phytophthora ramorum Originates from the Laurosilva Forests of East Asia. in Journal of Fungi. 2021;7(3).
doi:10.3390/jof7030226
conv_1536 .

Jung, Thomas, Horta Jung, Marilia, Webber, Joan, Kageyama, Koji, Hieno, Ayaka, Masuya, Hayato, Uematsu, Seiji, Perez-Sierra, Ana, Harris, Anna R., Forster, Jack, Rees, Helen, Scanu, Bruno, Patra, Sneha, Kudlacek, Tomas, Janousek, Josef, Corcobado, Tamara, Milenković, Ivan, Nagy, Zoltan, Csorba, Ildiko, Bakonyi, Jozsef, Brasier, Clive M., "The Destructive Tree Pathogen Phytophthora ramorum Originates from the Laurosilva Forests of East Asia" in Journal of Fungi, 7, no. 3 (2021),
https://doi.org/10.3390/jof7030226 .,
conv_1536 .