The European roe deer (Capreolus capreolus) is one of the most numerous and widespread ungulate species in Europe, which has complicated the assessment of its genetic diversity on a range-wide scale. In this study, we present the mitochondrial DNA control region (mtDNA CR) genetic diversity and population structure of roe deer in Europe based on the analyses of 3010 samples, which were described as European roe deer individuals. Our analyses revealed two main diversity hotspots, namely Eastern and Central Europe. We proposed that these hotspots result from the Siberian roe deer (C.pygargus) mtDNA introgression and the secondary contact of mtDNA clades, respectively. Significantly lower values of genetic diversity (nucleotide and haplotype diversity) were recorded in the peripheral areas of the species' range, including the southernmost parts of the Last Glacial Maximum (LGM) refugial areas. Roe deer population in Europe consists of 2-3 genetic groups according to SAMOVA, and 15-16 clus...ters identified by GENELAND. The main driver of roe deer population structure in the eastern parts of the continent has been introgression of mtDNA of C. pygargus. Spatial genetic analyses revealed a complex structure of roe deer on a pan-European scale, which presumably results from post-glacial recolonization of the continent from various parts of a large LGM refugial area by different roe deer mtDNA clades and haplogroups.
Ključne reči:
mtDNA / Introgression / European roe deer / Diversity / Control region
Izvor:
Mammalian Biology, 2022, 102, 5-6, 1743-1754
Finansiranje / projekti:
National Science Centre in Poland [2013/11/B/NZ8/00884]
European Commission's project BIOGEAST [PIRSES-GA-2009-247652]
TY - JOUR
AU - Plis, Kamila
AU - Niedzialkowska, Magdalena
AU - Borowik, Tomasz
AU - Lang, Johannes
AU - Heddergott, Mike
AU - Tiainen, Juha
AU - Bunevich, Aleksey
AU - Sprem, Nikica
AU - Paule, Ladislav
AU - Danilkin, Aleksey
AU - Kholodova, Marina
AU - Zvychaynaya, Elena
AU - Kashinina, Nadezhda
AU - Pokorny, Bostjan
AU - Flajsman, Katarina
AU - Paulauskas, Algimantas
AU - Đan, Mihajla
AU - Ristić, Zoran
AU - Novak, Lubos
AU - Kusza, Szilvia
AU - Miller, Christine
AU - Tsaparis, Dimitris
AU - Stoyanov, Stoyan
AU - Shkvyria, Maryna
AU - Suchentrunk, Franz
AU - Kutal, Miroslav
AU - Lavadinović, Vukan
AU - Snjegota, Dragana
AU - Krapal, Ana-Maria
AU - Danila, Gabriel
AU - Veeroja, Rauno
AU - Dulko, Elzbieta
AU - Jedrzejewska, Bogumila
PY - 2022
UR - https://omorika.sfb.bg.ac.rs/handle/123456789/1292
AB - The European roe deer (Capreolus capreolus) is one of the most numerous and widespread ungulate species in Europe, which has complicated the assessment of its genetic diversity on a range-wide scale. In this study, we present the mitochondrial DNA control region (mtDNA CR) genetic diversity and population structure of roe deer in Europe based on the analyses of 3010 samples, which were described as European roe deer individuals. Our analyses revealed two main diversity hotspots, namely Eastern and Central Europe. We proposed that these hotspots result from the Siberian roe deer (C.pygargus) mtDNA introgression and the secondary contact of mtDNA clades, respectively. Significantly lower values of genetic diversity (nucleotide and haplotype diversity) were recorded in the peripheral areas of the species' range, including the southernmost parts of the Last Glacial Maximum (LGM) refugial areas. Roe deer population in Europe consists of 2-3 genetic groups according to SAMOVA, and 15-16 clusters identified by GENELAND. The main driver of roe deer population structure in the eastern parts of the continent has been introgression of mtDNA of C. pygargus. Spatial genetic analyses revealed a complex structure of roe deer on a pan-European scale, which presumably results from post-glacial recolonization of the continent from various parts of a large LGM refugial area by different roe deer mtDNA clades and haplogroups.
T2 - Mammalian Biology
T1 - Mitochondrial DNA diversity and the population genetic structure of contemporary roe deer ( Capreolus capreolus ) in Europe
EP - 1754
IS - 5-6
SP - 1743
VL - 102
DO - 10.1007/s42991-022-00274-y
UR - conv_1645
ER -
@article{
author = "Plis, Kamila and Niedzialkowska, Magdalena and Borowik, Tomasz and Lang, Johannes and Heddergott, Mike and Tiainen, Juha and Bunevich, Aleksey and Sprem, Nikica and Paule, Ladislav and Danilkin, Aleksey and Kholodova, Marina and Zvychaynaya, Elena and Kashinina, Nadezhda and Pokorny, Bostjan and Flajsman, Katarina and Paulauskas, Algimantas and Đan, Mihajla and Ristić, Zoran and Novak, Lubos and Kusza, Szilvia and Miller, Christine and Tsaparis, Dimitris and Stoyanov, Stoyan and Shkvyria, Maryna and Suchentrunk, Franz and Kutal, Miroslav and Lavadinović, Vukan and Snjegota, Dragana and Krapal, Ana-Maria and Danila, Gabriel and Veeroja, Rauno and Dulko, Elzbieta and Jedrzejewska, Bogumila",
year = "2022",
abstract = "The European roe deer (Capreolus capreolus) is one of the most numerous and widespread ungulate species in Europe, which has complicated the assessment of its genetic diversity on a range-wide scale. In this study, we present the mitochondrial DNA control region (mtDNA CR) genetic diversity and population structure of roe deer in Europe based on the analyses of 3010 samples, which were described as European roe deer individuals. Our analyses revealed two main diversity hotspots, namely Eastern and Central Europe. We proposed that these hotspots result from the Siberian roe deer (C.pygargus) mtDNA introgression and the secondary contact of mtDNA clades, respectively. Significantly lower values of genetic diversity (nucleotide and haplotype diversity) were recorded in the peripheral areas of the species' range, including the southernmost parts of the Last Glacial Maximum (LGM) refugial areas. Roe deer population in Europe consists of 2-3 genetic groups according to SAMOVA, and 15-16 clusters identified by GENELAND. The main driver of roe deer population structure in the eastern parts of the continent has been introgression of mtDNA of C. pygargus. Spatial genetic analyses revealed a complex structure of roe deer on a pan-European scale, which presumably results from post-glacial recolonization of the continent from various parts of a large LGM refugial area by different roe deer mtDNA clades and haplogroups.",
journal = "Mammalian Biology",
title = "Mitochondrial DNA diversity and the population genetic structure of contemporary roe deer ( Capreolus capreolus ) in Europe",
pages = "1754-1743",
number = "5-6",
volume = "102",
doi = "10.1007/s42991-022-00274-y",
url = "conv_1645"
}
Plis, K., Niedzialkowska, M., Borowik, T., Lang, J., Heddergott, M., Tiainen, J., Bunevich, A., Sprem, N., Paule, L., Danilkin, A., Kholodova, M., Zvychaynaya, E., Kashinina, N., Pokorny, B., Flajsman, K., Paulauskas, A., Đan, M., Ristić, Z., Novak, L., Kusza, S., Miller, C., Tsaparis, D., Stoyanov, S., Shkvyria, M., Suchentrunk, F., Kutal, M., Lavadinović, V., Snjegota, D., Krapal, A., Danila, G., Veeroja, R., Dulko, E.,& Jedrzejewska, B.. (2022). Mitochondrial DNA diversity and the population genetic structure of contemporary roe deer ( Capreolus capreolus ) in Europe. in Mammalian Biology, 102(5-6), 1743-1754.
https://doi.org/10.1007/s42991-022-00274-y
conv_1645
Plis K, Niedzialkowska M, Borowik T, Lang J, Heddergott M, Tiainen J, Bunevich A, Sprem N, Paule L, Danilkin A, Kholodova M, Zvychaynaya E, Kashinina N, Pokorny B, Flajsman K, Paulauskas A, Đan M, Ristić Z, Novak L, Kusza S, Miller C, Tsaparis D, Stoyanov S, Shkvyria M, Suchentrunk F, Kutal M, Lavadinović V, Snjegota D, Krapal A, Danila G, Veeroja R, Dulko E, Jedrzejewska B. Mitochondrial DNA diversity and the population genetic structure of contemporary roe deer ( Capreolus capreolus ) in Europe. in Mammalian Biology. 2022;102(5-6):1743-1754.
doi:10.1007/s42991-022-00274-y
conv_1645 .
